Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq175 116 3e-21
seq131 104 2e-17
seq40 96.9 3e-15
>seq175
Length=5584636
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| ||||| || ||||| || ||||| || | ||| |||| |||| ||
Sbjct 1836502 ATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTT 1836443
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| || ||||| |||| | ||||||||| || | ||| ||||||||||| || || ||
Sbjct 1836442 TTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTT 1836383
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
||||||| |||||| || || || | ||| | |||||||||| || || || |
Sbjct 1836382 GGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCAT 1836323
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
|| ||||||||||| || |||||
Sbjct 1836322 TAGGGTTTTTACAAAAATGTGCAT 1836299
>seq131
Length=8015323
Score = 104 bits (114), Expect = 2e-17
Identities = 165/236 (70%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 101234 TAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTG 101293
|||||| ||||| || || || | || | || || || || ||||| || || |||
Sbjct 2518409 TAGACA---CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTG 2518465
Query 101294 TAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGA 101353
|| || | | || | |||| |||| ||||| || ||||| ||||| | ||| ||
Sbjct 2518466 TAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGG 2518525
Query 101354 TCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGAC 101413
|| || ||||||||||| || ||||| || ||| || ||| | || | ||||||
Sbjct 2518526 TCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTG 2518585
Query 101414 GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || |||||||| |||| || || ||||| || || || || || ||||||||
Sbjct 2518586 GGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641
>seq40
Length=19935044
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || || ||||| || | | ||| | | |||| |||| |||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || || || || |||||||||||||| || || ||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||||| | || | |||||| | |||||| || || |||| || || || |||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || ||||| || || |||||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCAT 1219039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396247862167311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |