Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq175 116 3e-21 seq131 104 2e-17 seq40 96.9 3e-15 >seq175 Length=5584636 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| ||||| || ||||| || ||||| || | ||| |||| |||| || Sbjct 1836502 ATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTT 1836443 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| |||| | ||||||||| || | ||| ||||||||||| || || || Sbjct 1836442 TTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTT 1836383 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| |||||| || || || | ||| | |||||||||| || || || | Sbjct 1836382 GGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCAT 1836323 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || ||||| Sbjct 1836322 TAGGGTTTTTACAAAAATGTGCAT 1836299 >seq131 Length=8015323 Score = 104 bits (114), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 101234 TAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTG 101293 |||||| ||||| || || || | || | || || || || ||||| || || ||| Sbjct 2518409 TAGACA---CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTG 2518465 Query 101294 TAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGA 101353 || || | | || | |||| |||| ||||| || ||||| ||||| | ||| || Sbjct 2518466 TAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGG 2518525 Query 101354 TCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGAC 101413 || || ||||||||||| || ||||| || ||| || ||| | || | |||||| Sbjct 2518526 TCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTG 2518585 Query 101414 GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| |||| || || ||||| || || || || || |||||||| Sbjct 2518586 GGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 >seq40 Length=19935044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || |||||||||||||| || || || Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||| | || | |||||| | |||||| || || |||| || || || ||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || ||||| || || ||||| Sbjct 1219061 AGGGTCTTTACGAAAATTTGCAT 1219039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396247862167311