Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq258 190 4e-43 seq122 129 1e-24 seq88 95.1 2e-14 seq102 84.2 4e-11 seq3 84.2 4e-11 >seq258 Length=2582069 Score = 190 bits (210), Expect = 4e-43 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 1962813 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 1962872 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || ||||| |||||||| || | |||||| |||||| Sbjct 1962873 TCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCTGCGTTCTCGGCCTTGAGTGTCTTCACC 1962932 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1962933 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGA 1962992 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| ||| Sbjct 1962993 CGGTTCCTCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGA 1963052 Query 241625 GAC 241627 ||| Sbjct 1963053 GAC 1963055 >seq122 Length=8875436 Score = 129 bits (142), Expect = 1e-24 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | || || |||| | Sbjct 4918966 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGGAGGCTGGCCGT---GGAC-GC 4918911 Query 241475 C--CTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 | || ||| || | || ||||| ||||||||||||||| || |||| |||||| || Sbjct 4918910 CAACTCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTC 4918851 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| |||||| |||||| || | ||| || | ||| || || || | || ||||| || Sbjct 4918850 CAGCTTGCGCTTGCGGCACTTCGAGGCAGCGATGCGATTGCGCAGCCGTTTGCGTTCTGC 4918791 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||| ||||| ||||||||||| || ||| Sbjct 4918790 CTTGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 4918754 >seq88 Length=11737398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 370060 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 370119 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || |||||||||||||||||||| |||| || |||||| ||| Sbjct 370120 -TTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 370178 Query 213647 GGAC 213650 ||| Sbjct 370179 AGAC 370182 >seq102 Length=10627846 Score = 84.2 bits (92), Expect = 4e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541 |||||| | | |||| ||| ||||| || ||||| | | || ||||| | || Sbjct 1346548 CAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAGTATACTCTACTAT 1346489 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 || |||||||||||||||||| ||| || ||||||||||| |||| ||| || Sbjct 1346488 TTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATT 1346429 Query 213602 GGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 |||||||||||||||||||| | | || |||||| ||| ||| Sbjct 1346428 ATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGAC 1346380 >seq3 Length=37301544 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 4280055 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 4280114 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| ||||||||| Sbjct 4280115 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGTGACTCCATGTCA 4280174 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 4280175 ATGGGGGAC 4280183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931459173976320