Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq258 190 4e-43
seq122 129 1e-24
seq88 95.1 2e-14
seq102 84.2 4e-11
seq3 84.2 4e-11
>seq258
Length=2582069
Score = 190 bits (210), Expect = 4e-43
Identities = 188/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 1962813 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 1962872
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || || ||||| |||||||| || | |||||| ||||||
Sbjct 1962873 TCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCTGCGTTCTCGGCCTTGAGTGTCTTCACC 1962932
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 1962933 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGA 1962992
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| |||
Sbjct 1962993 CGGTTCCTCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGA 1963052
Query 241625 GAC 241627
|||
Sbjct 1963053 GAC 1963055
>seq122
Length=8875436
Score = 129 bits (142), Expect = 1e-24
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | || || |||| |
Sbjct 4918966 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGGAGGCTGGCCGT---GGAC-GC 4918911
Query 241475 C--CTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530
| || ||| || | || ||||| ||||||||||||||| || |||| |||||| ||
Sbjct 4918910 CAACTCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTC 4918851
Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590
||| |||||| |||||| || | ||| || | ||| || || || | || ||||| ||
Sbjct 4918850 CAGCTTGCGCTTGCGGCACTTCGAGGCAGCGATGCGATTGCGCAGCCGTTTGCGTTCTGC 4918791
Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||||||| ||||| ||||||||||| || |||
Sbjct 4918790 CTTGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 4918754
>seq88
Length=11737398
Score = 95.1 bits (104), Expect = 2e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||| | || || |||||||||||||||||| ||| || ||||||||||| |||
Sbjct 370060 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 370119
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || |||||||||||||||||||| |||| || |||||| |||
Sbjct 370120 -TTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 370178
Query 213647 GGAC 213650
|||
Sbjct 370179 AGAC 370182
>seq102
Length=10627846
Score = 84.2 bits (92), Expect = 4e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541
|||||| | | |||| ||| ||||| || ||||| | | || ||||| | ||
Sbjct 1346548 CAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAGTATACTCTACTAT 1346489
Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601
|| |||||||||||||||||| ||| || ||||||||||| |||| ||| ||
Sbjct 1346488 TTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATT 1346429
Query 213602 GGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650
|||||||||||||||||||| | | || |||||| ||| |||
Sbjct 1346428 ATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGAC 1346380
>seq3
Length=37301544
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 4280055 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 4280114
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || ||||| |||||||||
Sbjct 4280115 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGTGACTCCATGTCA 4280174
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 4280175 ATGGGGGAC 4280183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931459173976320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |