Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq87 98.7 2e-15 seq9 93.3 8e-14 >seq87 Length=11743621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 394/606 (65%), Gaps = 32/606 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | ||| Sbjct 8843000 GATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCTGGAT 8842941 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | |||| | || || | || || || | || || | Sbjct 8842940 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTAA----AGAAAGATATTTTAC 8842885 Query 25592 AGTACGTGTT--GGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || |||| ||| ||||||||||| ||||| ||| |||| || || || | Sbjct 8842884 ATCACATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTGGT 8842825 Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | | |||| ||| ||| || ||| ||| |||| || ||||| || Sbjct 8842824 GCGATTTAGCCAACAAGTTCAGATTACA--GAAGCCTGCTGTCTCTATGGCTTCCAAATT 8842767 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACG--TACATTACA 25764 || || ||||| | || ||||| |||| ||| || || | |||| ||||||| | Sbjct 8842766 GCAATGGAAAACATACATTCTGAAATGTA---CAATCTCCTTACTGACACTTACATTAAA 8842710 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || || || |||||| || || || || | | |||| | Sbjct 8842709 GATTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTGAACA-ATGCCTTGTGTAAAGAAG 8842651 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATC----AACAGCCAGAGCGCTACGTTTGGCGAGCG 25880 ||||| |||||| || | |||||| || | ||| ||||| | ||| || | Sbjct 8842650 AAGGCAGATTGGGCCTTGCATTGGATCGGGGAAAA---AGAA-GCTACCTATGGTAAGTG 8842595 Query 25881 GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTT 25940 ||||||||||| | | || || ||||| || ||||| ||||| |||| || Sbjct 8842594 TGATGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATT 8842535 Query 25941 CTGGCTCAAGCAGAAGGGGA-CCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 ||| |||||| | | | ||| ||||| || || | |||||| || |||| |||| Sbjct 8842534 CTGACTCAAG-AAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCA 8842476 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059 | || ||| || | ||| | || ||| ||||| | | || |||||||| |||| Sbjct 8842475 GAGATGAGAGTTTACACTGTGACTTTACCTGCATAGCGTTCA---AACACTTGCTACACA 8842419 Query 26060 AACCTT 26065 |||||| Sbjct 8842418 AACCTT 8842413 >seq9 Length=34412642 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || ||||||||||||||||||| || || || || ||| ||| || ||||| || || | Sbjct 15801706 GGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCTGCTATAT 15801765 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| ||| || ||||| || || ||| |||||||| || ||||||||| Sbjct 15801766 TCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAGC 15801824 Query 25999 AGGGACGA 26006 || || || Sbjct 15801825 AGAGATGA 15801832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928771386429120