Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq87 98.7 2e-15
seq9 93.3 8e-14
>seq87
Length=11743621
Score = 98.7 bits (108), Expect = 2e-15
Identities = 394/606 (65%), Gaps = 32/606 (5%)
Strand=Plus/Minus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | |||
Sbjct 8843000 GATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCTGGAT 8842941
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591
|| |||||||||| | |||| | || || | || || || | || || |
Sbjct 8842940 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTAA----AGAAAGATATTTTAC 8842885
Query 25592 AGTACGTGTT--GGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
| || |||| ||| ||||||||||| ||||| ||| |||| || || || |
Sbjct 8842884 ATCACATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTGGT 8842825
Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707
| |||| | | |||| ||| ||| || ||| ||| |||| || ||||| ||
Sbjct 8842824 GCGATTTAGCCAACAAGTTCAGATTACA--GAAGCCTGCTGTCTCTATGGCTTCCAAATT 8842767
Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACG--TACATTACA 25764
|| || ||||| | || ||||| |||| ||| || || | |||| ||||||| |
Sbjct 8842766 GCAATGGAAAACATACATTCTGAAATGTA---CAATCTCCTTACTGACACTTACATTAAA 8842710
Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824
|| | || || || || || |||||| || || || || | | |||| |
Sbjct 8842709 GATTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTGAACA-ATGCCTTGTGTAAAGAAG 8842651
Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATC----AACAGCCAGAGCGCTACGTTTGGCGAGCG 25880
||||| |||||| || | |||||| || | ||| ||||| | ||| || |
Sbjct 8842650 AAGGCAGATTGGGCCTTGCATTGGATCGGGGAAAA---AGAA-GCTACCTATGGTAAGTG 8842595
Query 25881 GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTT 25940
||||||||||| | | || || ||||| || ||||| ||||| |||| ||
Sbjct 8842594 TGATGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATT 8842535
Query 25941 CTGGCTCAAGCAGAAGGGGA-CCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999
||| |||||| | | | ||| ||||| || || | |||||| || |||| ||||
Sbjct 8842534 CTGACTCAAG-AAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCA 8842476
Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059
| || ||| || | ||| | || ||| ||||| | | || |||||||| ||||
Sbjct 8842475 GAGATGAGAGTTTACACTGTGACTTTACCTGCATAGCGTTCA---AACACTTGCTACACA 8842419
Query 26060 AACCTT 26065
||||||
Sbjct 8842418 AACCTT 8842413
>seq9
Length=34412642
Score = 93.3 bits (102), Expect = 8e-14
Identities = 99/128 (77%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| ||||||||||||||||||| || || || || ||| ||| || ||||| || || |
Sbjct 15801706 GGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCTGCTATAT 15801765
Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGC 25998
||||||| ||| ||| || ||||| || || ||| |||||||| || |||||||||
Sbjct 15801766 TCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAGC 15801824
Query 25999 AGGGACGA 26006
|| || ||
Sbjct 15801825 AGAGATGA 15801832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928771386429120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |