Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq107 331 1e-85 seq26 212 7e-50 seq17 84.2 3e-11 >seq107 Length=10122068 Score = 331 bits (366), Expect = 1e-85 Identities = 668/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || |||| ||| |||| ||| || ||| || || ||| || || || || Sbjct 4552364 CAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTGTTGGC 4552423 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || || || ||||||| || ||| |||| |||||| |||||||| Sbjct 4552424 AAACAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCCCCGGCCCCGAAAACGCAGAC 4552480 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || || |||| |||||||| | || || || | || || ||||| Sbjct 4552481 GGAGCGCACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCGCCTTC 4552540 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||| | ||| || ||||| || || | |||||||||||| || ||||||| || | Sbjct 4552541 ATAGTAGTACCATTTGACAAATCTTGCCACCGCCTGCATGTCAGACATGTCGTACTTATG 4552600 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| ||| | | || || || | | || | || | ||||||||| || | || Sbjct 4552601 GCTTGAGGAGAATG-CGCCAGGGACTTCAGCGATCCTTTGAATGGTGGCCCAGAGATATT 4552659 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| ||||| || | ||| || || || | | |||| | | | Sbjct 4552660 CATCAGGGCTGTAGGTGTCTTTTGCCCACTCTATAAAGTTTTGGATTTTTTCATTCTCTA 4552719 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| | ||||| | | || ||||| || || ||||| || || | ||| Sbjct 4552720 GCACGTAACCCACGTATTTCCGACTGACCACAAAATAGGCACTGCCTGAAAACACAGGTG 4552779 Query 160471 TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | | ||| || | ||||||| || ||||| | | | || || | | Sbjct 4552780 TTTCAAGAGGAGGAGGCACTTTGTCTGCCCCCGTGTTTGTTAGCTTCCCATTAATGACTT 4552839 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 ||| ||||| |||||||| | ||||| | |||||| || || || || |||| Sbjct 4552840 CGTAACGCTTTTTCCACCTTTCTGCTTTGTGGGCTGGCATTTTCTCAGTTTCGAGGCTGT 4552899 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| | || || |||||| |||| || || ||||| || || | ||||| | Sbjct 4552900 TTTCACCCATTAATGACTTGAGCTGCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 4552959 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | ||||||| ||||||||| | || |||| || |||||| ||| Sbjct 4552960 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCCTTCA 4553019 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | |||||||| || |||||||| ||||| || || || ||| || | | Sbjct 4553020 TGCAGTTGAGGTCTGCCTGGACACGGCTCCATGAAGCATAGACCACACGCTCCAGCTGGC 4553079 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC---AGAAAGAACA 160827 ||||||| ||||||||| ||| || ||| |||| |||| ||| || | |||| | | Sbjct 4553080 TGGCCACGAAGACGTTACTGAAGCAGGACGCGATGCCCATCACTGCATCTAAAAAGGA-A 4553138 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || | | | ||| ||||||||| | |||||| | ||||||||| ||||||||||| Sbjct 4553139 TCCT--CAGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 4553196 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| |||| ||| || || || || || | || ||||| || || || |||| Sbjct 4553197 TCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACTACTATAGAATATGCAATTGGAA 4553256 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| ||| || || |||| | | || || ||| ||||||| ||| | Sbjct 4553257 ACTCCACCTCTTCTTTGCTAAGGGGTTCTACGATATATTTGCGCCTCTTGATGAAAGACC 4553316 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 4553317 TACAATCACTGGTCATGTTTATATA 4553341 >seq26 Length=23966317 Score = 212 bits (234), Expect = 7e-50 Identities = 239/320 (75%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || ||||| | ||| | || ||| || ||||| || || || || | |||||||||||| Sbjct 22114358 TAGAGAGTGAGGCAAGCTTCTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGGCAC 22114417 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 || | || || || ||||||| |||||||||||| || |||| |||| ||||| ||| Sbjct 22114418 ATATAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTTAAGGTTGTGTTTCTGAGT 22114477 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 ||| || || ||||| || | || ||||| | ||| ||||| ||||| ||||||||| Sbjct 22114478 CCCGGATGTGTGATGTTTACCCTGTCCTTATAGGTAGGCTGAACCACAACTCCGTGGTTC 22114537 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||| ||||||| || ||||| || ||||| | |||||||| || || ||| Sbjct 22114538 TTGCTGAAGGTGACCATGTTTTCTGGGCTTGTAGCCTTCACTTTCTGCCATGTCACAATC 22114597 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | || || ||||| || ||||| | ||||| || ||||||| | | ||| Sbjct 22114598 AAGACTTCCTGGTCAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAACCGCTCT 22114657 Query 168450 CGCTCATCTTGAGTTACGAC 168469 ||||| || || || || Sbjct 22114658 TTTTCATCCTGGGTCACCAC 22114677 Score = 141 bits (156), Expect = 1e-28 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| | |||| || | ||| || ||||||||||| || || |||| ||| ||| Sbjct 22111666 CCTTTGCTCACGGTTTCCCTGACGTCAGTCACAGTTCCCAAGTGCAGCACCTCGCAGATC 22111725 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| | | || || | |||| || ||||| ||||| | ||||| || || | Sbjct 22111726 ACCTCCC---TCCCCACATAGCTCTCGGGGTCTTTGACTTGCAGGATGCTGGTGACCGAT 22111782 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || |||||| | || | || | | |||||||||||||| ||||| || |||||| Sbjct 22111783 GTGGTCCCATTGGGGTGGGAGACACTCTCAGTGCTGTTCTCAATTCCTGACCCAGCCACC 22111842 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 |||||| | || ||||| || || || || || ||||||||||| | ||||||| Sbjct 22111843 TTCCAGGAGATCACAGGGGCTGGGCGGGCAGTGGCAGAGCAGGTGAGATTTAAG 22111896 >seq17 Length=26699591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 4083636 AGATACCTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 4083577 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | || | ||||| | | || Sbjct 4083576 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCC 4083517 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||| | |||||| || |||| |||||||||||||| | Sbjct 4083516 AGAAAAGCATTGTAGAGCTTTTCAGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 4083457 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 4083456 AGATAAAATTTGCA 4083443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577173578037480