Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq107 331 1e-85
seq26 212 7e-50
seq17 84.2 3e-11
>seq107
Length=10122068
Score = 331 bits (366), Expect = 1e-85
Identities = 668/985 (68%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
||| || || |||| ||| |||| ||| || ||| || || ||| || || || ||
Sbjct 4552364 CAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTGTTGGC 4552423
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || || || ||||||| || ||| |||| |||||| ||||||||
Sbjct 4552424 AAACAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCCCCGGCCCCGAAAACGCAGAC 4552480
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| || || |||| |||||||| | || || || | || || |||||
Sbjct 4552481 GGAGCGCACGTGGACACCACTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCGCCTTC 4552540
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||| | ||| || ||||| || || | |||||||||||| || ||||||| || |
Sbjct 4552541 ATAGTAGTACCATTTGACAAATCTTGCCACCGCCTGCATGTCAGACATGTCGTACTTATG 4552600
Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350
| | ||| ||| | | || || || | | || | || | ||||||||| || | ||
Sbjct 4552601 GCTTGAGGAGAATG-CGCCAGGGACTTCAGCGATCCTTTGAATGGTGGCCCAGAGATATT 4552659
Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410
| || |||||||| ||||| || | ||| || || || | | |||| | | |
Sbjct 4552660 CATCAGGGCTGTAGGTGTCTTTTGCCCACTCTATAAAGTTTTGGATTTTTTCATTCTCTA 4552719
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| |||| | ||||| | | || ||||| || || ||||| || || | |||
Sbjct 4552720 GCACGTAACCCACGTATTTCCGACTGACCACAAAATAGGCACTGCCTGAAAACACAGGTG 4552779
Query 160471 TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| | ||| || | ||||||| || ||||| | | | || || | |
Sbjct 4552780 TTTCAAGAGGAGGAGGCACTTTGTCTGCCCCCGTGTTTGTTAGCTTCCCATTAATGACTT 4552839
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
||| ||||| |||||||| | ||||| | |||||| || || || || ||||
Sbjct 4552840 CGTAACGCTTTTTCCACCTTTCTGCTTTGTGGGCTGGCATTTTCTCAGTTTCGAGGCTGT 4552899
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| |||| | || || |||||| |||| || || ||||| || || | ||||| |
Sbjct 4552900 TTTCACCCATTAATGACTTGAGCTGCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 4552959
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| |||| || | ||||||| ||||||||| | || |||| || |||||| |||
Sbjct 4552960 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCCTTCA 4553019
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
|||| || | |||||||| || |||||||| ||||| || || || ||| || | |
Sbjct 4553020 TGCAGTTGAGGTCTGCCTGGACACGGCTCCATGAAGCATAGACCACACGCTCCAGCTGGC 4553079
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC---AGAAAGAACA 160827
||||||| ||||||||| ||| || ||| |||| |||| ||| || | |||| | |
Sbjct 4553080 TGGCCACGAAGACGTTACTGAAGCAGGACGCGATGCCCATCACTGCATCTAAAAAGGA-A 4553138
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
|| | | | ||| ||||||||| | |||||| | ||||||||| |||||||||||
Sbjct 4553139 TCCT--CAGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 4553196
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| || | ||| |||| ||| || || || || || | || ||||| || || || ||||
Sbjct 4553197 TCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACTACTATAGAATATGCAATTGGAA 4553256
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
|||| ||| || || |||| | | || || ||| ||||||| ||| |
Sbjct 4553257 ACTCCACCTCTTCTTTGCTAAGGGGTTCTACGATATATTTGCGCCTCTTGATGAAAGACC 4553316
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| |||||
Sbjct 4553317 TACAATCACTGGTCATGTTTATATA 4553341
>seq26
Length=23966317
Score = 212 bits (234), Expect = 7e-50
Identities = 239/320 (75%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| ||||| | ||| | || ||| || ||||| || || || || | ||||||||||||
Sbjct 22114358 TAGAGAGTGAGGCAAGCTTCTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGGCAC 22114417
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
|| | || || || ||||||| |||||||||||| || |||| |||| ||||| |||
Sbjct 22114418 ATATAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTTAAGGTTGTGTTTCTGAGT 22114477
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
||| || || ||||| || | || ||||| | ||| ||||| ||||| |||||||||
Sbjct 22114478 CCCGGATGTGTGATGTTTACCCTGTCCTTATAGGTAGGCTGAACCACAACTCCGTGGTTC 22114537
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
| |||||||||| ||||||| || ||||| || ||||| | |||||||| || || |||
Sbjct 22114538 TTGCTGAAGGTGACCATGTTTTCTGGGCTTGTAGCCTTCACTTTCTGCCATGTCACAATC 22114597
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
| || || | || || ||||| || ||||| | ||||| || ||||||| | | |||
Sbjct 22114598 AAGACTTCCTGGTCAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAACCGCTCT 22114657
Query 168450 CGCTCATCTTGAGTTACGAC 168469
||||| || || || ||
Sbjct 22114658 TTTTCATCCTGGGTCACCAC 22114677
Score = 141 bits (156), Expect = 1e-28
Identities = 172/234 (74%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930
|| ||||| | |||| || | ||| || ||||||||||| || || |||| ||| |||
Sbjct 22111666 CCTTTGCTCACGGTTTCCCTGACGTCAGTCACAGTTCCCAAGTGCAGCACCTCGCAGATC 22111725
Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990
||||| | | || || | |||| || ||||| ||||| | ||||| || || |
Sbjct 22111726 ACCTCCC---TCCCCACATAGCTCTCGGGGTCTTTGACTTGCAGGATGCTGGTGACCGAT 22111782
Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050
|| || |||||| | || | || | | |||||||||||||| ||||| || ||||||
Sbjct 22111783 GTGGTCCCATTGGGGTGGGAGACACTCTCAGTGCTGTTCTCAATTCCTGACCCAGCCACC 22111842
Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104
|||||| | || ||||| || || || || || ||||||||||| | |||||||
Sbjct 22111843 TTCCAGGAGATCACAGGGGCTGGGCGGGCAGTGGCAGAGCAGGTGAGATTTAAG 22111896
>seq17
Length=26699591
Score = 84.2 bits (92), Expect = 3e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| || |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 4083636 AGATACCTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 4083577
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || ||||| |||| || || || || | || | ||||| | | ||
Sbjct 4083576 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCC 4083517
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||||| |||||| | |||||| || |||| |||||||||||||| |
Sbjct 4083516 AGAAAAGCATTGTAGAGCTTTTCAGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 4083457
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 4083456 AGATAAAATTTGCA 4083443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577173578037480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |