Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq175 129 1e-24 seq113 100 6e-16 seq131 87.8 4e-12 seq48 86.0 1e-11 >seq175 Length=5584636 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || || ||| | || || || |||| |||| || Sbjct 1836502 ATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTT 1836444 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 ||| ||||||||||| | ||||||||||||||| | |||||||||||||| || || | Sbjct 1836443 TTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCT 1836384 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | ||||||||| ||| | |||||| | ||| | || ||||| ||||| || || Sbjct 1836383 TGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCA 1836324 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | ||| || ||||| || Sbjct 1836323 TTAGGGTTTTTACAAAAATGTGCATCTT 1836296 >seq113 Length=9683949 Score = 100 bits (110), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 || ||| | ||| | || || | ||| | ||| | ||| ||||| || || || ||||| Sbjct 8523881 ACTACCACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTAGA-ATGTTGTAGTCAGA 8523939 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||||| |||||||||| | |||||| || ||| || Sbjct 8523940 CAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGG 8523997 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||| | ||| | ||| || Sbjct 8523998 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAAGTGTTCAAC 8524057 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || | ||| || || || || ||||||||||| Sbjct 8524058 CTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108 >seq131 Length=8015323 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| ||| || || ||||| | || ||| |||| |||| || || |||||||| Sbjct 2518450 CTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAA 2518509 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| || ||||| || ||||| || || ||||| || ||||| || || || ||||| Sbjct 2518510 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 2518569 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | || | |||||||| || || || || ||||| || || || || | Sbjct 2518570 CTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCAC 2518629 Query 192525 AAATATCTGCATT 192537 || ||||||||| Sbjct 2518630 GAAGATCTGCATT 2518642 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| || Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || || || || || | || | || || || || || ||||||||||| Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 192511 GTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAAA 192549 ||||| ||||| | ||| ||||||||| | | |||| || Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATTGTCTGAGAAGAA 2520236 >seq48 Length=17931790 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || |||||||| | |||||||| | Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || || ||| || ||| | ||| || | ||| || || ||||| | Sbjct 9683800 TATCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTA 9683859 Query 192500 TGGTTTTACCAGT-TAATGTTTTAATAAATATCTGCATTTT 192539 | || | || | | ||||| || || ||||||||||| Sbjct 9683860 CAATCTTCCACGTCTGAGGTTTT-ATGAAAATCTGCATTTT 9683899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984400243891050