Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq175 129 1e-24
seq113 100 6e-16
seq131 87.8 4e-12
seq48 86.0 1e-11
>seq175
Length=5584636
Score = 129 bits (142), Expect = 1e-24
Identities = 155/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391
||| | ||||| ||| ||| || || || || ||| | || || || |||| |||| ||
Sbjct 1836502 ATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTT 1836444
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
||| ||||||||||| | ||||||||||||||| | |||||||||||||| || || |
Sbjct 1836443 TTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCT 1836384
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| ||||||||| ||| | |||||| | ||| | || ||||| ||||| || ||
Sbjct 1836383 TGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCA 1836324
Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539
||| ||||| | ||| || ||||| ||
Sbjct 1836323 TTAGGGTTTTTACAAAAATGTGCATCTT 1836296
>seq113
Length=9683949
Score = 100 bits (110), Expect = 6e-16
Identities = 162/231 (70%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|| ||| | ||| | || || | ||| | ||| | ||| ||||| || || || |||||
Sbjct 8523881 ACTACCACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTAGA-ATGTTGTAGTCAGA 8523939
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || ||| |||| |||| ||||| |||||||||| | |||||| || ||| ||
Sbjct 8523940 CAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGG 8523997
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| ||| | ||| | ||| ||
Sbjct 8523998 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAAGTGTTCAAC 8524057
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| ||||| ||||| || | ||| || || || || |||||||||||
Sbjct 8524058 CTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108
>seq131
Length=8015323
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404
|||||| ||| || || ||||| | || ||| |||| |||| || || ||||||||
Sbjct 2518450 CTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAA 2518509
Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
||| || ||||| || ||||| || || ||||| || ||||| || || || |||||
Sbjct 2518510 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 2518569
Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524
|| | || | |||||||| || || || || ||||| || || || || |
Sbjct 2518570 CTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCAC 2518629
Query 192525 AAATATCTGCATT 192537
|| |||||||||
Sbjct 2518630 GAAGATCTGCATT 2518642
Score = 84.2 bits (92), Expect = 4e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450
||||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| ||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510
|| || || || || | || | || || || || || |||||||||||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 192511 GTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAAA 192549
||||| ||||| | ||| ||||||||| | | |||| ||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATTGTCTGAGAAGAA 2520236
>seq48
Length=17931790
Score = 86.0 bits (94), Expect = 1e-11
Identities = 117/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| ||| || ||||||||||| | ||| || |||||||| | |||||||| |
Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
||||||| || || || ||| || ||| | ||| || | ||| || || ||||| |
Sbjct 9683800 TATCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTA 9683859
Query 192500 TGGTTTTACCAGT-TAATGTTTTAATAAATATCTGCATTTT 192539
| || | || | | ||||| || || |||||||||||
Sbjct 9683860 CAATCTTCCACGTCTGAGGTTTT-ATGAAAATCTGCATTTT 9683899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984400243891050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |