Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq175 116 7e-21 seq113 102 1e-16 >seq175 Length=5584636 Score = 116 bits (128), Expect = 7e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || |||| | | ||||| | || | ||| | ||||| ||| || ||| || Sbjct 1836534 TTCTTAGTACCGCTACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTG 1836475 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || | |||| || | || |||| || ||| |||||||| || | ||||||||| Sbjct 1836474 TAGTCAAACAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGA 1836415 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 ||||| | |||||||||||||| || || || ||||||||| ||| |||||||| Sbjct 1836414 TCAGGAGAAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAG 1836355 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || ||||| ||||| || || ||| ||||| | || || ||||| || Sbjct 1836354 GGTTCATCCTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296 >seq113 Length=9683949 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || || ||| | ||||| || || | ||| | ||| | ||| |||||| | || Sbjct 8523872 TTTCTTAGCACTACCACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTAGAA-TGTT 8523930 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || || | ||| | || |||| ||||| ||||||| || | |||||| || Sbjct 8523931 GTAGTCAGACAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTG 8523990 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 | ||| || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 8523991 G--AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAA 8524048 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || | ||||| ||||| || | ||| || || ||||| ||||||||||| Sbjct 8524049 GTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905064460313400