Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq175 116 7e-21
seq113 102 1e-16
>seq175
Length=5584636
Score = 116 bits (128), Expect = 7e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || |||| | | ||||| | || | ||| | ||||| ||| || ||| ||
Sbjct 1836534 TTCTTAGTACCGCTACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTG 1836475
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || | |||| || | || |||| || ||| |||||||| || | |||||||||
Sbjct 1836474 TAGTCAAACAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGA 1836415
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
||||| | |||||||||||||| || || || ||||||||| ||| ||||||||
Sbjct 1836414 TCAGGAGAAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAG 1836355
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| | || ||||| ||||| || || ||| ||||| | || || ||||| ||
Sbjct 1836354 GGTTCATCCTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296
>seq113
Length=9683949
Score = 102 bits (112), Expect = 1e-16
Identities = 168/240 (70%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || || ||| | ||||| || || | ||| | ||| | ||| |||||| | ||
Sbjct 8523872 TTTCTTAGCACTACCACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTAGAA-TGTT 8523930
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || || | ||| | || |||| ||||| ||||||| || | |||||| ||
Sbjct 8523931 GTAGTCAGACAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTG 8523990
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
| ||| || |||||||| ||||| || || || |||||||| ||| ||||| |
Sbjct 8523991 G--AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAA 8524048
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||| || | ||||| ||||| || | ||| || || ||||| |||||||||||
Sbjct 8524049 GTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905064460313400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |