Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq40 104 7e-17 >seq40 Length=19935044 Score = 104 bits (114), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| ||||| || || ||||||| ||||| ||||| Sbjct 12068928 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCAATGAGCCCCTCACGACCCCCCATGGCATG 12068987 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 12068988 GAAGAAGAACTCGGTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGCT 12069047 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || | | || |||| Sbjct 12069048 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTAAACCCAAATGG 12069107 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || ||||||||||| || Sbjct 12069108 GATCCGCTTGCCCTCCACGTTCTGCTGCCC 12069137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471698362996851