Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq131 131 2e-25 seq175 116 3e-21 seq47 93.3 4e-14 seq48 84.2 2e-11 >seq131 Length=8015323 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | |||||||| || || || || |||||||| ||| Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| ||||| || ||||| || || Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2518522 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 2518521 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAAC 2518462 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || ||| |||| |||| ||| | ||||| Sbjct 2518461 ATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | ||||| |||| |||||||| || || || || || || || Sbjct 2520226 ACAATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCC 2520167 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||||||| ||||| || ||||| || Sbjct 2520166 AGTGACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGAC 2520107 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACA 24849 || || | ||||||||||| |||||||| Sbjct 2520106 CAGCAGAGGTTGATCTTTGCTGGGAAACA 2520078 >seq175 Length=5584636 Score = 116 bits (128), Expect = 3e-21 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| |||| || || || || || || || | ||| || | Sbjct 1836298 GATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTC 1836357 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| |||||| |||||||| || ||||||||||| |||| ||||| Sbjct 1836358 AGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCA 1836417 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 ||| | |||||||||| || ||| | ||||| || | || || ||| || || | Sbjct 1836418 ACAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGA-TGGACCTACTTTGTTTGACTACA 1836476 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||||| || || || || |||| Sbjct 1836477 ACATTCAAAAGGAGTCTACTCTTCATCTTG 1836506 >seq47 Length=17992032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 24708 AGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACA 24767 |||| || || ||||| ||||| || || || || || || | | || || || | Sbjct 7326887 AGATTTTCATAAAAACTCTAACAGGGAAGACCATCACTGTCAAGGCTGAGCCCTTAGATA 7326946 Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827 || |||||| |||||| |||||||| || || ||| |||| ||||| ||||| || Sbjct 7326947 CAATAGAAAACGTAAAAGCCAAGATCCAGGAAAAGGAAAGAATTCCTCCTGATCAGCACA 7327006 Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA-AACATGTCAGATTATAACATT 24886 | |||||||||| || | || ||| | ||| || | ||| |||| || || |||||| Sbjct 7327007 GACTGATCTTTGCTGGCAGGCAACTGAAAGATG-GACATAACTTGTCTGACTACAACATT 7327065 Query 24887 CAAAAGGA 24894 |||||||| Sbjct 7327066 CAAAAGGA 7327073 >seq48 Length=17931790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || || ||| | | || | || | | | || || || || ||| || | Sbjct 9683896 ATGCAGATTTTCATAAAACCTCAGACGTGGAAGATTGTAACTCTGGAGGTTGAACCCTCG 9683837 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||| || ||||||||||| || |||||||| | ||| ||||| Sbjct 9683836 GATACAATAGAAAACGTACAAGCCAAGATCCAAGATAAGGAAGGAATTCTTCCTGATCAG 9683777 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | |||||||||| || || || |||| ||| Sbjct 9683776 CAAAGACTGATCTTTGCTGGCAAGCAAATGGAAGAT 9683741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449862041218440