Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq131 131 2e-25
seq175 116 3e-21
seq47 93.3 4e-14
seq48 84.2 2e-11
>seq131
Length=8015323
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | |||||||| || || || || |||||||| |||
Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||||||| ||||| || ||||| || ||
Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2518522
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || |||||||| ||| | | | |||| || || |||
Sbjct 2518521 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAAC 2518462
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || || || || || || ||| |||| |||| ||| | |||||
Sbjct 2518461 ATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| | ||||| |||| |||||||| || || || || || || ||
Sbjct 2520226 ACAATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCC 2520167
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||||||||||||| ||||| || ||||| ||
Sbjct 2520166 AGTGACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGAC 2520107
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACA 24849
|| || | ||||||||||| ||||||||
Sbjct 2520106 CAGCAGAGGTTGATCTTTGCTGGGAAACA 2520078
>seq175
Length=5584636
Score = 116 bits (128), Expect = 3e-21
Identities = 154/210 (73%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| || ||| | ||||| |||| || || || || || || || | ||| || |
Sbjct 1836298 GATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTC 1836357
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| |||||| |||||||| || ||||||||||| |||| |||||
Sbjct 1836358 AGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCA 1836417
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881
||| | |||||||||| || ||| | ||||| || | || || ||| || || |
Sbjct 1836418 ACAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGA-TGGACCTACTTTGTTTGACTACA 1836476
Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910
||||||||||||| || || || || ||||
Sbjct 1836477 ACATTCAAAAGGAGTCTACTCTTCATCTTG 1836506
>seq47
Length=17992032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 24708 AGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACA 24767
|||| || || ||||| ||||| || || || || || || | | || || || |
Sbjct 7326887 AGATTTTCATAAAAACTCTAACAGGGAAGACCATCACTGTCAAGGCTGAGCCCTTAGATA 7326946
Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827
|| |||||| |||||| |||||||| || || ||| |||| ||||| ||||| ||
Sbjct 7326947 CAATAGAAAACGTAAAAGCCAAGATCCAGGAAAAGGAAAGAATTCCTCCTGATCAGCACA 7327006
Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA-AACATGTCAGATTATAACATT 24886
| |||||||||| || | || ||| | ||| || | ||| |||| || || ||||||
Sbjct 7327007 GACTGATCTTTGCTGGCAGGCAACTGAAAGATG-GACATAACTTGTCTGACTACAACATT 7327065
Query 24887 CAAAAGGA 24894
||||||||
Sbjct 7327066 CAAAAGGA 7327073
>seq48
Length=17931790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || || ||| | | || | || | | | || || || || ||| || |
Sbjct 9683896 ATGCAGATTTTCATAAAACCTCAGACGTGGAAGATTGTAACTCTGGAGGTTGAACCCTCG 9683837
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| ||| || ||||||||||| || |||||||| | ||| |||||
Sbjct 9683836 GATACAATAGAAAACGTACAAGCCAAGATCCAAGATAAGGAAGGAATTCTTCCTGATCAG 9683777
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
||| | |||||||||| || || || |||| |||
Sbjct 9683776 CAAAGACTGATCTTTGCTGGCAAGCAAATGGAAGAT 9683741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449862041218440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |