Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq131 138 7e-28
seq59 105 4e-18
seq40 98.7 6e-16
seq24 96.9 2e-15
>seq131
Length=8015323
Score = 138 bits (152), Expect = 7e-28
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||||||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| | || |||| ||||| ||||| || || ||||||| | |||||||| | ||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | || ||| ||||| || || || | ||| ||| ||| |
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 2518592
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| |||| ||| || ||||| || || | |||||| || |||||||||||
Sbjct 2518593 CTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641
>seq59
Length=15706754
Score = 105 bits (116), Expect = 4e-18
Identities = 154/212 (73%), Gaps = 7/212 (3%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||||||| |||||| ||| ||||||||||| ||||| | || || | | || |||
Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCT-AGAGAGTGTGATTGTCCTCC 4366217
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|| | || || | | |||| || |||||||| | | | ||||||||||| |
Sbjct 4366218 AGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTGG 4366277
Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGAT-TCATTGGCCTCGACATCAACGGTTATGGTC 34945
||||| ||||||| | || || ||| ||| ||| ||||| |||| || ||||||
Sbjct 4366278 ATTTTGGCTTTGACG--TTCTTGAT-GATGTCACTGGGCTCGAACTCAAGAGTGATGGTC 4366334
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || |||||| |||| ||||||||||||||
Sbjct 4366335 TTGCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366
>seq40
Length=19935044
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || |||| |||| ||||| ||||| || || ||
Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || | |||||||| | || | || || || || | || || || |||
Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTT 1219111
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | ||| ||| || || || | ||| |||||||||||||| |||||||||||
Sbjct 1219110 CTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTAC 1219051
Query 34966 AAAGATCTGCAT 34977
|| || |||||
Sbjct 1219050 GAAAATTTGCAT 1219039
>seq24
Length=24352400
Score = 96.9 bits (106), Expect = 2e-15
Identities = 138/193 (72%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|| |||||| |||||||| || || || |||| |||| ||||| || || || || |
Sbjct 13198983 CTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACA 13199042
Query 34846 GATCAGTCGTTGCTGGTCTTGCG-GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904
||||| | |||||||| | | | | ||||||||||| | ||||| |||||||
Sbjct 13199043 AATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGT 13199102
Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964
| || | ||| ||| ||| || || | ||| |||||||| ||| | |||||||| |
Sbjct 13199103 TCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCA 13199162
Query 34965 CAAAGATCTGCAT 34977
||||| |||||
Sbjct 13199163 TGAAGATTTGCAT 13199175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325667701603937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |