Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq131 138 7e-28 seq59 105 4e-18 seq40 98.7 6e-16 seq24 96.9 2e-15 >seq131 Length=8015323 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || ||||||| | |||||||| | || Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||||| || || || | ||| ||| ||| | Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 2518592 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| || ||||| || || | |||||| || ||||||||||| Sbjct 2518593 CTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 >seq59 Length=15706754 Score = 105 bits (116), Expect = 4e-18 Identities = 154/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| |||||| ||| ||||||||||| ||||| | || || | | || ||| Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCT-AGAGAGTGTGATTGTCCTCC 4366217 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || | || || | | |||| || |||||||| | | | ||||||||||| | Sbjct 4366218 AGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTGG 4366277 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGAT-TCATTGGCCTCGACATCAACGGTTATGGTC 34945 ||||| ||||||| | || || ||| ||| ||| ||||| |||| || |||||| Sbjct 4366278 ATTTTGGCTTTGACG--TTCTTGAT-GATGTCACTGGGCTCGAACTCAAGAGTGATGGTC 4366334 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||| |||| |||||||||||||| Sbjct 4366335 TTGCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366 >seq40 Length=19935044 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || |||| |||| ||||| ||||| || || || Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || | |||||||| | || | || || || || | || || || ||| Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTT 1219111 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||| || || || | ||| |||||||||||||| ||||||||||| Sbjct 1219110 CTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTAC 1219051 Query 34966 AAAGATCTGCAT 34977 || || ||||| Sbjct 1219050 GAAAATTTGCAT 1219039 >seq24 Length=24352400 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 || |||||| |||||||| || || || |||| |||| ||||| || || || || | Sbjct 13198983 CTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACA 13199042 Query 34846 GATCAGTCGTTGCTGGTCTTGCG-GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904 ||||| | |||||||| | | | | ||||||||||| | ||||| ||||||| Sbjct 13199043 AATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGT 13199102 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | || | ||| ||| ||| || || | ||| |||||||| ||| | |||||||| | Sbjct 13199103 TCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCA 13199162 Query 34965 CAAAGATCTGCAT 34977 ||||| ||||| Sbjct 13199163 TGAAGATTTGCAT 13199175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325667701603937