Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq131 145 6e-30
seq175 105 5e-18
seq48 89.7 4e-13
>seq131
Length=8015323
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| |||| || |||||||| ||||| || ||||| || || |
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || || ||||||||| | ||||| || ||||| || || |||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || |||||||| | ||| |||||| | || | |||||| | ||||||
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||| || || || || || || ||||| || || || |||||||||
Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 95.1 bits (104), Expect = 9e-15
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
||||| |||||| | ||||| || ||||| || || || || || || |||||||| |
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
||| ||||| | || | |||||| | || || ||||| || || ||||| ||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 29761 GTTAAGGTTTTAACAAATATCTGCATT 29787
||||||||||| ||||| |||||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq175
Length=5584636
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636
||| | |||||| || || || ||||||||||| || || | || | ||| ||
Sbjct 1836508 CACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTC 1836449
Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696
|||| |||||||||| | |||| ||| || ||||| || | ||| || ||||| || ||
Sbjct 1836448 CAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTG 1836389
Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
| || ||| ||| |||||| || || || |||| | |||||||| || || ||
Sbjct 1836388 GATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTT 1836329
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||| |||||| ||||| || ||||| ||
Sbjct 1836328 CCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296
>seq48
Length=17931790
Score = 89.7 bits (98), Expect = 4e-13
Identities = 122/165 (74%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 29627 GAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCT 29686
||| ||| || | ||| ||||||||| | |||| |||||||||||| || |||| || |
Sbjct 9683737 GAGCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTT 9683796
Query 29687 CTTTGTCTTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGA 29745
| || ||||| || || | ||| || |||||| || || || |||| || || |||
Sbjct 9683797 CCTTATCTTG-GATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGA 9683855
Query 29746 GTTATAGTTTTGCCAGT-TAAGGTTTTAACAAATATCTGCATTTT 29789
|||| | | || | || | |||||||| ||| |||||||||||
Sbjct 9683856 GTTACAATCTTCCACGTCTGAGGTTTTATGAAA-ATCTGCATTTT 9683899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385189514406543
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |