Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq131 145 6e-30 seq175 105 5e-18 seq48 89.7 4e-13 >seq131 Length=8015323 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || |||||||| ||||| || ||||| || || | Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||||||| | ||||| || ||||| || || ||| Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | |||||| | |||||| Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || || || ||||| || || || ||||||||| Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 ||||| |||||| | ||||| || ||||| || || || || || || |||||||| | Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 ||| ||||| | || | |||||| | || || ||||| || || ||||| || Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 29761 GTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||||| ||||| ||||||||| Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq175 Length=5584636 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| | |||||| || || || ||||||||||| || || | || | ||| || Sbjct 1836508 CACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTC 1836449 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 |||| |||||||||| | |||| ||| || ||||| || | ||| || ||||| || || Sbjct 1836448 CAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTG 1836389 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || ||| ||| |||||| || || || |||| | |||||||| || || || Sbjct 1836388 GATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTT 1836329 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||| |||||| ||||| || ||||| || Sbjct 1836328 CCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296 >seq48 Length=17931790 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 29627 GAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCT 29686 ||| ||| || | ||| ||||||||| | |||| |||||||||||| || |||| || | Sbjct 9683737 GAGCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTT 9683796 Query 29687 CTTTGTCTTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGA 29745 | || ||||| || || | ||| || |||||| || || || |||| || || ||| Sbjct 9683797 CCTTATCTTG-GATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGA 9683855 Query 29746 GTTATAGTTTTGCCAGT-TAAGGTTTTAACAAATATCTGCATTTT 29789 |||| | | || | || | |||||||| ||| ||||||||||| Sbjct 9683856 GTTACAATCTTCCACGTCTGAGGTTTTATGAAA-ATCTGCATTTT 9683899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385189514406543