Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq131 174 3e-38 seq175 136 8e-27 seq30 131 3e-25 seq48 120 6e-22 seq154 98.7 2e-15 seq47 98.7 2e-15 seq113 91.5 3e-13 >seq131 Length=8015323 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || | |||||| || || |||||||| || || || ||||| Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||||||||| | || || || || ||||| Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| |||||||| || ||||| ||||| || ||| | || ||||| Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | || || ||||| || ||||| ||||| || || ||||||||| Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 ||||| ||||||||||| | || || || || ||||| || |||||||| ||||| ||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||||| || || || ||||| || ||| | || || || || | || || || || || Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| ||||||||| Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq175 Length=5584636 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||||||| || || || || || || ||| | | | | || ||||| |||| | Sbjct 1836501 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTTT 1836442 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| |||||||| |||| |||||||| ||||| || ||||| Sbjct 1836441 TTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTTG 1836382 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || ||||| ||||| | || | ||| || ||||| || | Sbjct 1836381 GCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCATT 1836322 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||||||| || ||||| Sbjct 1836321 AGGGTTTTTACAAAAATGTGCAT 1836299 >seq30 Length=22861086 Score = 131 bits (144), Expect = 3e-25 Identities = 206/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 60287 ATTAAATGGTTTGCCGGAGGTCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCAT 60346 ||||| ||| | || || || ||||||||||| ||||| ||| |||||||||| |||||| Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273 Query 60347 GTTATTATGTATACTTATTATGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTA 60406 || |||||||| | || ||||| | |||| | ||| || | || | |||||| | Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213 Query 60407 TGGTGGAAGCGTTATCTTACTATAATGCAATTGTTACAATTCCATATAGCTATAGGACAT 60466 |||||||| | || || || || |||| || | || |||||| | | | ||||| Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153 Query 60467 ACCGCTATGTCCATTTACATAGATTGTCCGTTTCCAAAATGGACACAATGGTCAGTTATC 60526 || || ||||| | | | ||| | || || || ||||||| || ||| | || | Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093 Query 60527 ATTTATTCTATTACTTTTATATTACTGTTTGGTAACTTCTATTTTAGAACATACA 60581 | || | || | || |||| || ||| ||||||||| | || | ||||||| Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038 >seq48 Length=17931790 Score = 120 bits (132), Expect = 6e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || ||||||||||| |||||||| ||||| ||| | |||||||||||| Sbjct 9683742 TCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTTA 9683801 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| |||| ||| ||||| || ||||| ||||| || |||| ||||| Sbjct 9683802 TCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTACA 9683861 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | ||| | |||| || ||||||||| Sbjct 9683862 ATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATT 9683897 >seq154 Length=6958011 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | ||||| || || || || ||||| || || ||| Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || ||| || || ||| | || ||||||||||||| ||| |||||||| || Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACAAG 5294534 >seq47 Length=17992032 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || |||| ||||| | ||||||||||| ||||| || ||||| ||||| |||| |||| Sbjct 7327040 CCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTCC 7326981 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || || ||||| |||||||| ||||| || ||||| || || | | | ||| Sbjct 7326980 TTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGTG 7326921 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 || ||||| ||||| | || |||| || |||| Sbjct 7326920 ATGGTCTTCCCTGTTAGAGTTTTTATGAAAATCT 7326887 >seq113 Length=9683949 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || | || || || ||||| | | | || ||||| |||||| Sbjct 8523906 TGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGT 8523964 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | |||||||||| ||||| || || ||||| |||||||||||||| || ||||| Sbjct 8523965 TAGTCAGCAAAGATCAGTCTCTGCTGGA--GGAGGAATTCCTTCCTTATCCTGGATCTTG 8524022 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||| | || ||||| |||| || | | ||| || ||||| | | Sbjct 8524023 GCCTTTACATTTCCTATTGTATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATT 8524082 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || |||| || ||||||||| Sbjct 8524083 AGGGTATTTATGAAAATCTGCATT 8524106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981747658803497