Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq131 174 3e-38
seq175 136 8e-27
seq30 131 3e-25
seq48 120 6e-22
seq154 98.7 2e-15
seq47 98.7 2e-15
seq113 91.5 3e-13
>seq131
Length=8015323
Score = 174 bits (192), Expect = 3e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| ||||| ||||| || | |||||| || || |||||||| || || || |||||
Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || || || ||||||||||| | || || || || |||||
Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| |||||||| ||||| |||||||| || ||||| ||||| || ||| | || |||||
Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||| | || || ||||| || ||||| ||||| || || |||||||||
Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 104 bits (114), Expect = 5e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
||||| ||||||||||| | || || || || ||||| || |||||||| ||||| |||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||||| || || || ||||| || ||| | || || || || | || || || || ||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| || || || ||||| |||||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq175
Length=5584636
Score = 136 bits (150), Expect = 8e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| |||||||| || || || || || || ||| | | | | || ||||| |||| |
Sbjct 1836501 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTTT 1836442
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| ||||| |||||||| |||| |||||||| ||||| || |||||
Sbjct 1836441 TTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTTG 1836382
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||||||| || ||||| ||||| | || | ||| || ||||| || |
Sbjct 1836381 GCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCATT 1836322
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || |||||||| || |||||
Sbjct 1836321 AGGGTTTTTACAAAAATGTGCAT 1836299
>seq30
Length=22861086
Score = 131 bits (144), Expect = 3e-25
Identities = 206/295 (70%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 60287 ATTAAATGGTTTGCCGGAGGTCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCAT 60346
||||| ||| | || || || ||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273
Query 60347 GTTATTATGTATACTTATTATGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTA 60406
|| |||||||| | || ||||| | |||| | ||| || | || | |||||| |
Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213
Query 60407 TGGTGGAAGCGTTATCTTACTATAATGCAATTGTTACAATTCCATATAGCTATAGGACAT 60466
|||||||| | || || || || |||| || | || |||||| | | | |||||
Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153
Query 60467 ACCGCTATGTCCATTTACATAGATTGTCCGTTTCCAAAATGGACACAATGGTCAGTTATC 60526
|| || ||||| | | | ||| | || || || ||||||| || ||| | || |
Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093
Query 60527 ATTTATTCTATTACTTTTATATTACTGTTTGGTAACTTCTATTTTAGAACATACA 60581
| || | || | || |||| || ||| ||||||||| | || | |||||||
Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038
>seq48
Length=17931790
Score = 120 bits (132), Expect = 6e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | ||| || ||||||||||| |||||||| ||||| ||| | ||||||||||||
Sbjct 9683742 TCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTTA 9683801
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| |||| ||| ||||| || ||||| ||||| || |||| |||||
Sbjct 9683802 TCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTACA 9683861
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| | ||| | |||| || |||||||||
Sbjct 9683862 ATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATT 9683897
>seq154
Length=6958011
Score = 98.7 bits (108), Expect = 2e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| | |||||||||| | ||||| || || || || ||||| || || |||
Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || ||| || || ||| | || ||||||||||||| ||| |||||||| ||
Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
| ||| | || ||||| ||| | || || || ||||
Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACAAG 5294534
>seq47
Length=17992032
Score = 98.7 bits (108), Expect = 2e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| |||| ||||| | ||||||||||| ||||| || ||||| ||||| |||| ||||
Sbjct 7327040 CCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTCC 7326981
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| || || ||||| |||||||| ||||| || ||||| || || | | | |||
Sbjct 7326980 TTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGTG 7326921
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806
|| ||||| ||||| | || |||| || ||||
Sbjct 7326920 ATGGTCTTCCCTGTTAGAGTTTTTATGAAAATCT 7326887
>seq113
Length=9683949
Score = 91.5 bits (100), Expect = 3e-13
Identities = 144/204 (71%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || | || || || ||||| | | | || ||||| ||||||
Sbjct 8523906 TGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGT 8523964
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
| |||||||||| ||||| || || ||||| |||||||||||||| || |||||
Sbjct 8523965 TAGTCAGCAAAGATCAGTCTCTGCTGGA--GGAGGAATTCCTTCCTTATCCTGGATCTTG 8524022
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||| | || ||||| |||| || | | ||| || ||||| | |
Sbjct 8524023 GCCTTTACATTTCCTATTGTATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATT 8524082
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || |||| || |||||||||
Sbjct 8524083 AGGGTATTTATGAAAATCTGCATT 8524106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981747658803497
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |