Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq30 136 7e-27
seq154 104 4e-17
>seq30
Length=22861086
Score = 136 bits (150), Expect = 7e-27
Identities = 207/295 (70%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 58517 ATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCAT 58576
||||| ||| | ||||| || || |||||||| || || ||| ||||||| |||||||||
Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273
Query 58577 GTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTA 58636
|| |||||||| || ||||| | |||| | ||| | | || | |||||| |
Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213
Query 58637 TGGTGGAAGCGTTACCTTACTATAATGCAATTGGTACAATTCCATATAGCTATAGGACAT 58696
|||||||| | ||||| || || |||| |||| || |||||| | | | |||||
Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153
Query 58697 ACCGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGACGCAATGGTCAGTTATC 58756
|| || ||||| | | | ||| |||| || || ||||||| ||| ||| | || |
Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093
Query 58757 ATCTATTCTATTACTTTTATATTATTGTTTGGTAACTTCTATTTTAGAACATACA 58811
|||| | || | || |||| | ||| ||||||||| | || | |||||||
Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038
>seq154
Length=6958011
Score = 104 bits (114), Expect = 4e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444
|||||||||| | |||||||||| | ||||| || || ||||| ||||| || || |||
Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437
Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504
|| || ||| || || || || || ||||||||||||| ||| |||||||| ||
Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497
Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
| ||| | || ||||| ||| | ||||| || ||
Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACA 5294532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903339796637280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |