Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq30 136 7e-27 seq154 104 4e-17 >seq30 Length=22861086 Score = 136 bits (150), Expect = 7e-27 Identities = 207/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 58517 ATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCAT 58576 ||||| ||| | ||||| || || |||||||| || || ||| ||||||| ||||||||| Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273 Query 58577 GTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTA 58636 || |||||||| || ||||| | |||| | ||| | | || | |||||| | Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213 Query 58637 TGGTGGAAGCGTTACCTTACTATAATGCAATTGGTACAATTCCATATAGCTATAGGACAT 58696 |||||||| | ||||| || || |||| |||| || |||||| | | | ||||| Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153 Query 58697 ACCGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGACGCAATGGTCAGTTATC 58756 || || ||||| | | | ||| |||| || || ||||||| ||| ||| | || | Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093 Query 58757 ATCTATTCTATTACTTTTATATTATTGTTTGGTAACTTCTATTTTAGAACATACA 58811 |||| | || | || |||| | ||| ||||||||| | || | ||||||| Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038 >seq154 Length=6958011 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | |||||||||| | ||||| || || ||||| ||||| || || ||| Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || || ||| || || || || || ||||||||||||| ||| |||||||| || Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | ||| | || ||||| ||| | ||||| || || Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACA 5294532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903339796637280