Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq81 107 3e-18
seq40 107 3e-18
seq180 105 9e-18
seq145 104 3e-17
seq131 104 3e-17
seq33 86.0 8e-12
seq87 84.2 3e-11
seq57 84.2 3e-11
>seq81
Length=12574705
Score = 107 bits (118), Expect = 3e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 8495967 ATTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 8496026
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 8496027 TCCCCGACGGGGAG 8496040
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 8495969 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 8496028
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 8496029 CCCGACGGGGAGG 8496041
Score = 100 bits (110), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 11626487 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 11626546
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 11626547 CCCCGACGGGGAG 11626559
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 11626488 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 11626547
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 11626548 CCCGACGGGGAGG 11626560
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 8496040 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 8495981
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 8495980 TACTAACGAGGAATT 8495966
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| | |||||||
Sbjct 11626559 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11626500
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 11626499 TACTAACGAGGA 11626488
>seq40
Length=19935044
Score = 107 bits (118), Expect = 3e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 11338466 CTAATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 11338525
Query 8713 GATTCCCCGACGAGGAG 8729
|||||||||||| ||||
Sbjct 11338526 GATTCCCCGACGGGGAG 11338542
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 11338471 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 11338530
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 11338531 CCCGACGGGGAG 11338542
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 11338542 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11338483
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 11338482 TACTAACGAGGAATT 11338468
>seq180
Length=5441683
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 419332 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 419391
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 419392 CCCCGACGGGGAG 419404
Score = 105 bits (116), Expect = 9e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711
|| || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||
Sbjct 1723432 CCCTACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 1723373
Query 8712 CGATTCCCCGACGAGGAG 8729
||||||||||||| ||||
Sbjct 1723372 CGATTCCCCGACGGGGAG 1723355
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 419333 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 419392
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 419393 CCCGACGGGGAGG 419405
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 1723426 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1723367
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 1723366 CCCGACGGGGAGG 1723354
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 419404 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 419345
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 419344 TACTAACGAGGA 419333
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1723355 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1723414
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1723415 TACTAACGAGGA 1723426
>seq145
Length=7231261
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 29817 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 29876
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 29877 CCCCGACGGGGAGG 29890
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 29818 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 29877
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 29878 CCCGACGGGGAG 29889
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 29889 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29830
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 29829 TACTAACGAGGA 29818
>seq131
Length=8015323
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2530718 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2530659
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2530658 CCCGACGGGGAG 2530647
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2530718 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2530659
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 2530658 CCCGACGGGGAGG 2530646
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2533258 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2533199
Query 8718 CCCGACGAGGAG 8729
||||| | ||||
Sbjct 2533198 CCCGAGGGGGAG 2533187
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2530647 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2530706
Query 139413 TACTAACGAGGAT 139425
|||||||||||||
Sbjct 2530707 TACTAACGAGGAT 2530719
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2533259 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2533200
Query 11788 CCCCGACGAGGAG 11800
|||||| | ||||
Sbjct 2533199 CCCCGAGGGGGAG 2533187
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| | ||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2533187 CTCCCCCTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2533246
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2533247 TACTAACGAGGA 2533258
>seq33
Length=21447058
Score = 86.0 bits (94), Expect = 8e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||| ||||||||||||| ||||| || | ||||| | ||||||||| |||||||||||
Sbjct 1199266 TCCTCATTAGTATAGTGGTGAGTATCCCTGCCTGTCACCCGGGAGACCAGGGTTCGATTC 1199207
Query 8718 CCCGACGAGGA-GCAGA 8733
||||| | ||| |||||
Sbjct 1199206 CCCGAGGGGGAGGCAGA 1199190
Score = 86.0 bits (94), Expect = 8e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||| ||||||||||||| ||||| || | ||||| | ||||||||| ||||||||||
Sbjct 1199267 GTCCTCATTAGTATAGTGGTGAGTATCCCTGCCTGTCACCCGGGAGACCAGGGTTCGATT 1199208
Query 11788 CCCCGACGAGGAGGGAG 11804
|||||| | ||||| ||
Sbjct 1199207 CCCCGAGGGGGAGGCAG 1199191
>seq87
Length=11743621
Score = 84.2 bits (92), Expect = 3e-11
Identities = 68/81 (84%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||||||||| |||||| ||||| || | ||||| || |||| || |||||| |||||
Sbjct 7292750 TCCTCGTTAGTACAGTGGTGAGTATCCCTGCCTGTCACATGGGAAACTGGGGTTTGATTC 7292691
Query 8718 CCCGACGAGGA-GCAGAGGCC 8737
|||||||| || ||||| |||
Sbjct 7292690 CCCGACGATGAGGCAGACGCC 7292670
>seq57
Length=15922913
Score = 84.2 bits (92), Expect = 3e-11
Identities = 68/81 (84%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| || | ||||| | ||||||| |||||||||||
Sbjct 7043136 TCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACTAGGGTTCGATTC 7043195
Query 8718 CCCGACGAGGA-GCAGAGGCC 8737
||| ||| ||| ||||| |||
Sbjct 7043196 CCCAACGGGGAGGCAGACGCC 7043216
Score = 82.4 bits (90), Expect = 1e-10
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| || | ||||| | ||||||| ||||||||||
Sbjct 7043135 GTCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACTAGGGTTCGATT 7043194
Query 11788 CCCCGACGAGGAGGGAG 11804
|||| ||| ||||| ||
Sbjct 7043195 CCCCAACGGGGAGGCAG 7043211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652793200779120
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