Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq131 129 6e-25
seq40 118 1e-21
seq209 102 8e-17
seq88 82.4 7e-11
seq59 82.4 7e-11
>seq131
Length=8015323
Score = 129 bits (142), Expect = 6e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || || || | | | || || |||||||||||
Sbjct 2518445 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCA-TCTTCCAGCTGCTTGCC 2518503
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | || ||||||||| ||||| |||||||||||||| ||||||| |||
Sbjct 2518504 AGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTT 2518563
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| ||||||| || || | ||||| || || ||||||| ||
Sbjct 2518564 GACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGT 2518623
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 2518624 CTTCACGAAGATCTGCAT 2518641
Score = 111 bits (122), Expect = 2e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594
|| ||||||||| |||||||||||||||||||| ||||||| ||||| | |||||
Sbjct 2520098 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAAT 2520157
Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654
||||| |||||||||| || | ||||| |||||| || || | ||||| || || ||
Sbjct 2520158 GGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGAT 2520217
Query 133655 CTGCAT 133660
||||||
Sbjct 2520218 CTGCAT 2520223
>seq40
Length=19935044
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| || | ||| | | | || || ||||||||||
Sbjct 1219236 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1219178
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| |||||||||||||| || || |||||| ||
Sbjct 1219177 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCT 1219118
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||| ||||| || | ||||| ||| || || || || |
Sbjct 1219117 TTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGG 1219058
Query 133642 TTTTTACGAAAATCTGCAT 133660
| ||||||||||| |||||
Sbjct 1219057 TCTTTACGAAAATTTGCAT 1219039
Score = 82.4 bits (90), Expect = 7e-11
Identities = 88/114 (77%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| |||||||| || | ||| | | | || || |||||||||||
Sbjct 1219667 GTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1219609
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|| | ||||||| ||||||||| |||||||||||||| || || ||||||
Sbjct 1219608 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTT 1219555
>seq209
Length=4208363
Score = 102 bits (112), Expect = 8e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571
|| |||||||| || | ||||||| ||||||||| |||||||||||||| || || |
Sbjct 4009511 AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4009570
Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
| ||| ||| | | ||||| ||||| |||| ||||| || | ||||| ||| |||
Sbjct 4009571 AGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4009630
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| | |||| ||| || |||||
Sbjct 4009631 CCAGTCAGGATCTTTATGAAGATTTGCAT 4009659
>seq88
Length=11737398
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
|||||||| || || | |||||| |||||||||||||| |||| ||||| || |||
Sbjct 370063 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTG 370122
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||| | || || | |||||||| |||||||||||
Sbjct 370123 CTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGG 370160
>seq59
Length=15706754
Score = 82.4 bits (90), Expect = 7e-11
Identities = 143/204 (70%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517
|| ||||||||||||||||| || ||||| || | ||| |||||| ||||
Sbjct 4366165 TGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG-AGAGTGTGATTGTCCTCCAGCTCT 4366223
Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577
||||| | | | || |||||||||||||| | |||||| |||||||| ||| |||
Sbjct 4366224 TTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTGGAT-TTT 4366282
Query 133578 TGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| |||| | || | |||| ||||||| | || | |||| ||| ||||| ||
Sbjct 4366283 GGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTTGCCTGT 4366342
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| | || || || ||||||||
Sbjct 4366343 GAGGATCTTCACAAAGATCTGCAT 4366366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483382591628520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |