Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq131 129 6e-25 seq40 118 1e-21 seq209 102 8e-17 seq88 82.4 7e-11 seq59 82.4 7e-11 >seq131 Length=8015323 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || || | | | || || ||||||||||| Sbjct 2518445 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCA-TCTTCCAGCTGCTTGCC 2518503 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| ||||| |||||||||||||| ||||||| ||| Sbjct 2518504 AGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTT 2518563 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| || || ||||||| || Sbjct 2518564 GACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGT 2518623 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2518624 CTTCACGAAGATCTGCAT 2518641 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| |||||||||||||||||||| ||||||| ||||| | ||||| Sbjct 2520098 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAAT 2520157 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| |||||||||| || | ||||| |||||| || || | ||||| || || || Sbjct 2520158 GGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGAT 2520217 Query 133655 CTGCAT 133660 |||||| Sbjct 2520218 CTGCAT 2520223 >seq40 Length=19935044 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 1219236 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1219178 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| |||||||||||||| || || |||||| || Sbjct 1219177 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCT 1219118 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||| ||||| || | ||||| ||| || || || || | Sbjct 1219117 TTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGG 1219058 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||||||||| ||||| Sbjct 1219057 TCTTTACGAAAATTTGCAT 1219039 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| || | ||| | | | || || ||||||||||| Sbjct 1219667 GTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1219609 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || | ||||||| ||||||||| |||||||||||||| || || |||||| Sbjct 1219608 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTT 1219555 >seq209 Length=4208363 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 || |||||||| || | ||||||| ||||||||| |||||||||||||| || || | Sbjct 4009511 AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4009570 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||| ||| | | ||||| ||||| |||| ||||| || | ||||| ||| ||| Sbjct 4009571 AGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4009630 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| | |||| ||| || ||||| Sbjct 4009631 CCAGTCAGGATCTTTATGAAGATTTGCAT 4009659 >seq88 Length=11737398 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| |||||||||||||| |||| ||||| || ||| Sbjct 370063 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTG 370122 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | |||||||| ||||||||||| Sbjct 370123 CTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGG 370160 >seq59 Length=15706754 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 || ||||||||||||||||| || ||||| || | ||| |||||| |||| Sbjct 4366165 TGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG-AGAGTGTGATTGTCCTCCAGCTCT 4366223 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 ||||| | | | || |||||||||||||| | |||||| |||||||| ||| ||| Sbjct 4366224 TTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTGGAT-TTT 4366282 Query 133578 TGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || |||| | || | |||| ||||||| | || | |||| ||| ||||| || Sbjct 4366283 GGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTTGCCTGT 4366342 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || | || || || |||||||| Sbjct 4366343 GAGGATCTTCACAAAGATCTGCAT 4366366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483382591628520