Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq107 257 2e-63
seq26 242 4e-59
seq17 127 2e-24
>seq107
Length=10122068
Score = 257 bits (284), Expect = 2e-63
Identities = 621/937 (66%), Gaps = 15/937 (2%)
Strand=Plus/Plus
Query 162053 CGTGCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTC 162112
|| || |||| | ||||| | || | ||| || | |||||||| || || |||
Sbjct 4552342 CGGGCTCCAGAGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGA 4552401
Query 162113 GTTCCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGAT 162172
||| || |||||||| || |||| ||| ||| || | || ||||| || | |
Sbjct 4552402 CATCCATGTCAAACTTGTTGGCAAACAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGT 4552458
Query 162173 CCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGG 162232
|||| | ||||| ||||| ||||| |||||||| || || ||||| ||||| || |||
Sbjct 4552459 CCCCGGCCCCGAAAACGCAGACGGAGCGCACGTGGACACCACTGCAGGGCGGGTAGGGGG 4552518
Query 162233 CCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCA 162292
| || | | ||||| || || ||||| | ||| || || || || | | |||||||
Sbjct 4552519 CGCCCTTGGAAACATCGCCTTCATAGTAGTACCATTTGACAAATCTTGCCACCGCCTGCA 4552578
Query 162293 TGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCT 162352
|||| || |||||||||| | ||| | | || ||||| || | | | || |
Sbjct 4552579 TGTCAGACATGTCGTACTTATGGCTTGAGGAGAATGCGCCAGGGACTTCAGCGATCCTTT 4552638
Query 162353 GTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412
| | || ||||| || | ||| || || || || || || || | |||||| || || |
Sbjct 4552639 GAATGGTGGCCCAGAGATATTCATCAGGGCTGTAGGTGTCTTTTGCCCACTCTATAAAGT 4552698
Query 162413 CCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACG 162472
|| ||| || | ||| | |||| ||||| || | || | ||| || |
Sbjct 4552699 TTTGGATTTTTTCATTCTCTAGCACGTAACCCACGTATTTCCGACTGACCACAAAATAGG 4552758
Query 162473 CGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGA 162532
| || || |||||||| ||| | | |||||| ||| |||||||| ||||||||
Sbjct 4552759 CACTGCCTGAAAACACAGGTGTTTCAAGAGGAGGAGGCACTTTGTCTGCCCCCGTGTTTG 4552818
Query 162533 CTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592
|| | | || | | ||| ||| | ||| ||||||| ||| | || | |
Sbjct 4552819 TTAGCTTCCCATTAATGACTTCGTAACGCTTTTTCCACCTT----TCTGCTTTGTGGGCT 4552874
Query 162593 GGTGTT----CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATC 162648
|| || | || || || ||||| |||| || | ||| ||||| | || ||
Sbjct 4552875 GGCATTTTCTCAGTTTCGAGGCTGTTTTCACCCATTAATGACTTGAGCTGCCTGACAATT 4552934
Query 162649 TCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTA 162708
|| || ||||| |||| ||||| || | || || ||||| || | || ||||| |
Sbjct 4552935 TCCAGGTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCT 4552994
Query 162709 ACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGAC 162768
| || | || ||| || |||| | ||||| || || |||||||| || ||||| ||
Sbjct 4552995 GCACTCATTCTGTAGAGGTCCTTCATGCAGTTGAGGTCTGCCTGGACACGGCTCCATGAA 4553054
Query 162769 GCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATC 162828
|| || || || | ||||| | |||| || ||||| || ||| || || | ||
Sbjct 4553055 GCATAGACCACACGCTCCAGCTGGCTGGCCACGAAGACGTTACTGAAGCAGGACGCGATG 4553114
Query 162829 CCCATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886
|||||||| || | | || ||| || | ||| | || ||||| | ||| || |
Sbjct 4553115 CCCATCACTGCATCTAAAAAGGAATCC--TCAGATTTTTTGTCCACGTGAATGCAATAGA 4553172
Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946
||||||||| ||||||||||||||| | || |||| ||| || || || ||||| |
Sbjct 4553173 AATTCTGAGGCATGTAGATGGCCCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAA 4553232
Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
| || |||||||| || || || ||||| |||| ||
Sbjct 4553233 CTACTATAGAATATGCAATTGGAAACTCCACCTCTTC 4553269
>seq26
Length=23966317
Score = 242 bits (268), Expect = 4e-59
Identities = 247/322 (77%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
||||||| || || || | | || || || || || || ||||| |||| || | |
Sbjct 22114356 CATAGAGAGTGAGGCAAGCTTCTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGGC 22114415
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
||||| |||| || || ||||||| |||||| ||||| || || || || | |||||||
Sbjct 22114416 ACATATAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTTAAGGTTGTGTTTCTGA 22114475
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| | || || ||||| |||| |||||| || | |||||| || ||||| ||||| |
Sbjct 22114476 GTCCCGGATGTGTGATGTTTACCCTGTCCTTATAGGTAGGCTGAACCACAACTCCGTGGT 22114535
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| ||| |||||||||| ||||| |||||||| | |||||||| || || |
Sbjct 22114536 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTGTAGCCTTCACTTTCTGCCATGTCACAA 22114595
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||||| | ||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 22114596 TCAAGACTTCCTGGTCAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAACCGCT 22114655
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| |||| || || || |||||
Sbjct 22114656 CTTTTTCATCCTGGGTCACCAC 22114677
>seq17
Length=26699591
Score = 127 bits (140), Expect = 2e-24
Identities = 385/584 (66%), Gaps = 17/584 (3%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| |||||| | | |||||| || | | || || | | |
Sbjct 4083686 TCCAGTTAAAGTAACTAAGATATAACTTATTGTTTTTGTCAACTTCCTTCAGATACCTTG 4083627
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 4083626 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 4083567
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| || || || | ||||| | || |||| || ||
Sbjct 4083566 TCTCATAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCCAGAAAAGCAT 4083507
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| ||||| | ||||| ||||
Sbjct 4083506 TGTAGAGCTTTTCAGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 4083447
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 4083446 TGCAAGCAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 4083389
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || || || ||| || || || ||| | |
Sbjct 4083388 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGTTCATTGTAATA-CTTGACTCTGGCAT 4083330
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || ||||| || || ||||| |||||||| || ||
Sbjct 4083329 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 4083275
Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || | || | | || | ||| | | ||||| ||||| || ||||| ||
Sbjct 4083274 TTCAAACACAAAGGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 4083215
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
||| || | ||| || | || || ||||| |||| || |||| || |||| |||
Sbjct 4083214 GTCACGGCGGTAAGTCAGAGTCAGGTTGAATAGGTGCTCAATACCACTCTTTTG--GGGA 4083157
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAA 177463
||| | | || ||||| || |||||||| ||||| || || ||
Sbjct 4083156 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAA 4083113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578386282180800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |