Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq107 257 2e-63 seq26 242 4e-59 seq17 127 2e-24 >seq107 Length=10122068 Score = 257 bits (284), Expect = 2e-63 Identities = 621/937 (66%), Gaps = 15/937 (2%) Strand=Plus/Plus Query 162053 CGTGCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTC 162112 || || |||| | ||||| | || | ||| || | |||||||| || || ||| Sbjct 4552342 CGGGCTCCAGAGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGA 4552401 Query 162113 GTTCCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGAT 162172 ||| || |||||||| || |||| ||| ||| || | || ||||| || | | Sbjct 4552402 CATCCATGTCAAACTTGTTGGCAAACAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGT 4552458 Query 162173 CCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGG 162232 |||| | ||||| ||||| ||||| |||||||| || || ||||| ||||| || ||| Sbjct 4552459 CCCCGGCCCCGAAAACGCAGACGGAGCGCACGTGGACACCACTGCAGGGCGGGTAGGGGG 4552518 Query 162233 CCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCA 162292 | || | | ||||| || || ||||| | ||| || || || || | | ||||||| Sbjct 4552519 CGCCCTTGGAAACATCGCCTTCATAGTAGTACCATTTGACAAATCTTGCCACCGCCTGCA 4552578 Query 162293 TGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCT 162352 |||| || |||||||||| | ||| | | || ||||| || | | | || | Sbjct 4552579 TGTCAGACATGTCGTACTTATGGCTTGAGGAGAATGCGCCAGGGACTTCAGCGATCCTTT 4552638 Query 162353 GTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412 | | || ||||| || | ||| || || || || || || || | |||||| || || | Sbjct 4552639 GAATGGTGGCCCAGAGATATTCATCAGGGCTGTAGGTGTCTTTTGCCCACTCTATAAAGT 4552698 Query 162413 CCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACG 162472 || ||| || | ||| | |||| ||||| || | || | ||| || | Sbjct 4552699 TTTGGATTTTTTCATTCTCTAGCACGTAACCCACGTATTTCCGACTGACCACAAAATAGG 4552758 Query 162473 CGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGA 162532 | || || |||||||| ||| | | |||||| ||| |||||||| |||||||| Sbjct 4552759 CACTGCCTGAAAACACAGGTGTTTCAAGAGGAGGAGGCACTTTGTCTGCCCCCGTGTTTG 4552818 Query 162533 CTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592 || | | || | | ||| ||| | ||| ||||||| ||| | || | | Sbjct 4552819 TTAGCTTCCCATTAATGACTTCGTAACGCTTTTTCCACCTT----TCTGCTTTGTGGGCT 4552874 Query 162593 GGTGTT----CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATC 162648 || || | || || || ||||| |||| || | ||| ||||| | || || Sbjct 4552875 GGCATTTTCTCAGTTTCGAGGCTGTTTTCACCCATTAATGACTTGAGCTGCCTGACAATT 4552934 Query 162649 TCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTA 162708 || || ||||| |||| ||||| || | || || ||||| || | || ||||| | Sbjct 4552935 TCCAGGTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCT 4552994 Query 162709 ACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGAC 162768 | || | || ||| || |||| | ||||| || || |||||||| || ||||| || Sbjct 4552995 GCACTCATTCTGTAGAGGTCCTTCATGCAGTTGAGGTCTGCCTGGACACGGCTCCATGAA 4553054 Query 162769 GCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATC 162828 || || || || | ||||| | |||| || ||||| || ||| || || | || Sbjct 4553055 GCATAGACCACACGCTCCAGCTGGCTGGCCACGAAGACGTTACTGAAGCAGGACGCGATG 4553114 Query 162829 CCCATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 |||||||| || | | || ||| || | ||| | || ||||| | ||| || | Sbjct 4553115 CCCATCACTGCATCTAAAAAGGAATCC--TCAGATTTTTTGTCCACGTGAATGCAATAGA 4553172 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 ||||||||| ||||||||||||||| | || |||| ||| || || || ||||| | Sbjct 4553173 AATTCTGAGGCATGTAGATGGCCCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAA 4553232 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || |||||||| || || || ||||| |||| || Sbjct 4553233 CTACTATAGAATATGCAATTGGAAACTCCACCTCTTC 4553269 >seq26 Length=23966317 Score = 242 bits (268), Expect = 4e-59 Identities = 247/322 (77%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || || | | || || || || || || ||||| |||| || | | Sbjct 22114356 CATAGAGAGTGAGGCAAGCTTCTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGGC 22114415 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 ||||| |||| || || ||||||| |||||| ||||| || || || || | ||||||| Sbjct 22114416 ACATATAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTTAAGGTTGTGTTTCTGA 22114475 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| | || || ||||| |||| |||||| || | |||||| || ||||| ||||| | Sbjct 22114476 GTCCCGGATGTGTGATGTTTACCCTGTCCTTATAGGTAGGCTGAACCACAACTCCGTGGT 22114535 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||||| | |||||||| || || | Sbjct 22114536 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTGTAGCCTTCACTTTCTGCCATGTCACAA 22114595 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | ||| ||||| |||||||||||||| ||||||||||||||||| | Sbjct 22114596 TCAAGACTTCCTGGTCAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAACCGCT 22114655 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | |||| || || || ||||| Sbjct 22114656 CTTTTTCATCCTGGGTCACCAC 22114677 >seq17 Length=26699591 Score = 127 bits (140), Expect = 2e-24 Identities = 385/584 (66%), Gaps = 17/584 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | | |||||| || | | || || | | | Sbjct 4083686 TCCAGTTAAAGTAACTAAGATATAACTTATTGTTTTTGTCAACTTCCTTCAGATACCTTG 4083627 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 4083626 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 4083567 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 4083566 TCTCATAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCCAGAAAAGCAT 4083507 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 4083506 TGTAGAGCTTTTCAGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 4083447 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 4083446 TGCAAGCAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 4083389 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || || || ||| || || || ||| | | Sbjct 4083388 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGTTCATTGTAATA-CTTGACTCTGGCAT 4083330 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| || || Sbjct 4083329 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 4083275 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || | || | | || | ||| | | ||||| ||||| || ||||| || Sbjct 4083274 TTCAAACACAAAGGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 4083215 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||| || | ||| || | || || ||||| |||| || |||| || |||| ||| Sbjct 4083214 GTCACGGCGGTAAGTCAGAGTCAGGTTGAATAGGTGCTCAATACCACTCTTTTG--GGGA 4083157 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAA 177463 ||| | | || ||||| || |||||||| ||||| || || || Sbjct 4083156 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAA 4083113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578386282180800