Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq131 102 5e-17
>seq131
Length=8015323
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | |||| || || ||| |||||| || |||||||| || |
Sbjct 2518413 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAG 2518472
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || || ||| | || |||| || || || ||||| ||||| | |||||| || | |
Sbjct 2518473 ACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 2518532
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || || | |||| ||| |||||| || | ||
Sbjct 2518533 GAATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 2518591
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || ||||| || || || || || |||||||||||
Sbjct 2518592 ACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641
Score = 84.2 bits (92), Expect = 1e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 33604 TGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATT 33663
||||| || ||||| ||||| | |||||| || | || | ||||| ||||| ||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 33664 TTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722
|| || | || | ||| |||||| || | ||||| |||| ||||| ||||||||
Sbjct 2520138 TT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196
Query 33723 TGTTAACGTTTTTACAAAGATCTGCATAGT 33752
||||| ||||| |||||||||||||| ||
Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATTGT 2520226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328678669556160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |