Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq131 102 5e-17 >seq131 Length=8015323 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || || ||| |||||| || |||||||| || | Sbjct 2518413 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAG 2518472 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || ||| | || |||| || || || ||||| ||||| | |||||| || | | Sbjct 2518473 ACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 2518532 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| ||| |||||| || | || Sbjct 2518533 GAATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 2518591 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || || || || || ||||||||||| Sbjct 2518592 ACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33604 TGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATT 33663 ||||| || ||||| ||||| | |||||| || | || | ||||| ||||| || Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 33664 TTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 || || | || | ||| |||||| || | ||||| |||| ||||| |||||||| Sbjct 2520138 TT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||||| ||||| |||||||||||||| || Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATTGT 2520226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328678669556160