Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq175 105 2e-17 seq131 89.7 1e-12 seq40 86.0 1e-11 >seq175 Length=5584636 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || | || || || |||||| | || | ||| || || ||| | ||| Sbjct 1836314 AAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCAGATACAATAGAAAAT 1836373 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || ||||||||||||| || || || ||||| ||||| Sbjct 1836374 GTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAACAGAGACTGATCTTT 1836433 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || | ||||||||||| |||||| || |||||| | || || |||||| Sbjct 1836434 GCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAACATTCAAAAGGAGTCT 1836493 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| | ||||||||| Sbjct 1836494 ACTCTTCATCTTGTGTAGAGACTTCG 1836519 >seq131 Length=8015323 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| || || | ||||| Sbjct 2518566 GTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTT 2518507 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || | || |||||| ||||||||||||| Sbjct 2518506 GCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAACATCCAGAAAGAGTCC 2518447 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2518446 ACGCTGCACCTGGT 2518433 >seq40 Length=19935044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||||| ||| ||||||| | ||| | ||||||||| Sbjct 1219679 ACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1219620 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 1219619 AGCTGCTTGCCTGCAAAGATGAGCC 1219595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181725056634483