Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq175 105 2e-17
seq131 89.7 1e-12
seq40 86.0 1e-11
>seq175
Length=5584636
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || | || || || |||||| | || | ||| || || ||| | |||
Sbjct 1836314 AAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCAGATACAATAGAAAAT 1836373
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| ||||| || || ||||||||||||| || || || ||||| |||||
Sbjct 1836374 GTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAACAGAGACTGATCTTT 1836433
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || || | ||||||||||| |||||| || |||||| | || || ||||||
Sbjct 1836434 GCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAACATTCAAAAGGAGTCT 1836493
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| | |||||||||
Sbjct 1836494 ACTCTTCATCTTGTGTAGAGACTTCG 1836519
>seq131
Length=8015323
Score = 89.7 bits (98), Expect = 1e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||| ||||| || ||||| ||| || ||| || || | |||||
Sbjct 2518566 GTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTT 2518507
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| ||||||||||| | || || | || |||||| |||||||||||||
Sbjct 2518506 GCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAACATCCAGAAAGAGTCC 2518447
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 2518446 ACGCTGCACCTGGT 2518433
>seq40
Length=19935044
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| || ||||| ||||||||||||| ||| ||||||| | ||| | |||||||||
Sbjct 1219679 ACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1219620
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848
|||||||| || || ||||| ||||
Sbjct 1219619 AGCTGCTTGCCTGCAAAGATGAGCC 1219595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181725056634483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |