Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq240 104 7e-19
seq131 102 3e-18
seq180 100 9e-18
seq13 98.7 3e-17
seq61 95.1 4e-16
seq41 80.6 8e-12
seq96 78.8 3e-11
>seq240
Length=3126770
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1963230 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1963289
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1963290 CCGGGTTTCGGC 1963301
>seq131
Length=8015323
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2531306 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 2531247
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 2531246 TCCCGGGTTTCGGC 2531233
>seq180
Length=5441683
Score = 100 bits (110), Expect = 9e-18
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 3174919 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 3174860
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 3174859 CCGGGTTT 3174852
Score = 98.7 bits (108), Expect = 3e-17
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 2197651 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCG 2197710
Query 2832 GGCTTCAGC 2840
|| ||| ||
Sbjct 2197711 GGTTTCGGC 2197719
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2662970 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2662911
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2662910 CCGGGTTTCGGC 2662899
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3397446 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3397387
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3397386 CCGGGTTTCGGC 3397375
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2446913 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2446972
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2446973 CCGGGTTTCGGC 2446984
Score = 89.7 bits (98), Expect = 2e-14
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||| | |
Sbjct 2325052 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCTTGGTTTGATC 2325111
Query 2829 CCGGGCTTC 2837
||||| |||
Sbjct 2325112 CCGGGTTTC 2325120
Score = 86.0 bits (94), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||| |||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 1979596 GCTGAAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAATGTCCCTGGTTCAGCC 1979655
Query 2829 CCGGG 2833
| |||
Sbjct 1979656 CTGGG 1979660
Score = 80.6 bits (88), Expect = 8e-12
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| |||||||| | |||| ||||||||||| |||||||||| ||||||||||
Sbjct 666718 TGGCTGAAATAGCTCAGCTAGGAGCGCATTAGACTGGAGATCTAAAGTTCCCTGGTTCGC 666777
Query 2827 CCCCGGGCTTCAGC 2840
|| ||| ||| ||
Sbjct 666778 GCCTGGGTTTCGGC 666791
>seq13
Length=31187783
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2691387 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2691446
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2691447 CCGGGTTTCGGC 2691458
>seq61
Length=15428013
Score = 95.1 bits (104), Expect = 4e-16
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 13325549 ATGGCTGTAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTAGTTTG 13325608
Query 2826 ACCCCGGGCTTCAGC 2840
| ||| || ||| ||
Sbjct 13325609 ATCCCAGGTTTCGGC 13325623
>seq41
Length=19759197
Score = 80.6 bits (88), Expect = 8e-12
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 17985566 GCTGAAATAGCTCAGTTGGGAGACTATTAGAATGAAGATCTAAAGGTCCCTGCTTCA 17985510
Score = 78.8 bits (86), Expect = 3e-11
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829
||||| |||||||||||||||| ||||| ||||||||||||||||| | ||||||| ||
Sbjct 17803073 CTGAAATAGCTCAGTTGGGAGACCATTAAACTGAAGATCTAAAGGTACTCGGTTCAATCC 17803014
Query 2830 C 2830
|
Sbjct 17803013 C 17803013
>seq96
Length=11125689
Score = 78.8 bits (86), Expect = 3e-11
Identities = 58/68 (85%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||| |||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct 8829815 GCGGAAATAGCTCGGTTGGGAGAGGGTTAGGCTGAAGATCTAGAGGTCCCTGGTTCAATC 8829874
Query 2829 CCGGGCTT 2836
|||| ||
Sbjct 8829875 TCGGGTTT 8829882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15848503876335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |