Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq240 104 7e-19 seq131 102 3e-18 seq180 100 9e-18 seq13 98.7 3e-17 seq61 95.1 4e-16 seq41 80.6 8e-12 seq96 78.8 3e-11 >seq240 Length=3126770 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1963230 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1963289 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1963290 CCGGGTTTCGGC 1963301 >seq131 Length=8015323 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 2531306 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 2531247 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 2531246 TCCCGGGTTTCGGC 2531233 >seq180 Length=5441683 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 3174919 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 3174860 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 3174859 CCGGGTTT 3174852 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||| Sbjct 2197651 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCG 2197710 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 2197711 GGTTTCGGC 2197719 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2662970 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2662911 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2662910 CCGGGTTTCGGC 2662899 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3397446 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3397387 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3397386 CCGGGTTTCGGC 3397375 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2446913 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2446972 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2446973 CCGGGTTTCGGC 2446984 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||| ||||| | | Sbjct 2325052 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCTTGGTTTGATC 2325111 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 2325112 CCGGGTTTC 2325120 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| |||||||| |||||||||||||||||| |||||||||||| || Sbjct 1979596 GCTGAAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAATGTCCCTGGTTCAGCC 1979655 Query 2829 CCGGG 2833 | ||| Sbjct 1979656 CTGGG 1979660 Score = 80.6 bits (88), Expect = 8e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| |||||||| | |||| ||||||||||| |||||||||| |||||||||| Sbjct 666718 TGGCTGAAATAGCTCAGCTAGGAGCGCATTAGACTGGAGATCTAAAGTTCCCTGGTTCGC 666777 Query 2827 CCCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 666778 GCCTGGGTTTCGGC 666791 >seq13 Length=31187783 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2691387 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2691446 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2691447 CCGGGTTTCGGC 2691458 >seq61 Length=15428013 Score = 95.1 bits (104), Expect = 4e-16 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 13325549 ATGGCTGTAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTAGTTTG 13325608 Query 2826 ACCCCGGGCTTCAGC 2840 | ||| || ||| || Sbjct 13325609 ATCCCAGGTTTCGGC 13325623 >seq41 Length=19759197 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 17985566 GCTGAAATAGCTCAGTTGGGAGACTATTAGAATGAAGATCTAAAGGTCCCTGCTTCA 17985510 Score = 78.8 bits (86), Expect = 3e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||| |||||||||||||||| ||||| ||||||||||||||||| | ||||||| || Sbjct 17803073 CTGAAATAGCTCAGTTGGGAGACCATTAAACTGAAGATCTAAAGGTACTCGGTTCAATCC 17803014 Query 2830 C 2830 | Sbjct 17803013 C 17803013 >seq96 Length=11125689 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||| |||||||||| |||| ||||||||||| ||||||||||||||| | Sbjct 8829815 GCGGAAATAGCTCGGTTGGGAGAGGGTTAGGCTGAAGATCTAGAGGTCCCTGGTTCAATC 8829874 Query 2829 CCGGGCTT 2836 |||| || Sbjct 8829875 TCGGGTTT 8829882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848503876335