Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq26 246 4e-60 seq256 178 2e-39 seq16 165 1e-35 seq4 165 1e-35 seq35 136 5e-27 seq1 123 3e-23 seq49 100 3e-16 >seq26 Length=23966317 Score = 246 bits (272), Expect = 4e-60 Identities = 246/319 (77%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| | | || | ||||||| || || ||| | | |||||| ||| Sbjct 22114677 GTGGTGACCCAGGATGAAAAAGAGCGGTTGAACACACCTGCTTCCTTAAGATGCTCTCTG 22114618 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||| ||||| || ||||||| || ||||||||| | ||| | || | ||||| Sbjct 22114617 CAAACTGACCAGGAAGTCTTGATTGTGACATGGCAGAAAGTGAAGGCTACAAGCCCAGAA 22114558 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| ||||||| || ||||| ||||| | |||||||||| | Sbjct 22114557 AACATGGTCACCTTCAGCAAGAACCACGGAGTTGTGGTTCAGCCTACCTATAAGGACAGG 22114498 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| || | |||||| |||| ||||| | || || |||||||||||| | Sbjct 22114497 GTAAACATCACACATCCGGGACTCAGAAACACAACCTTAACCTTCTGGAATACCACCCTG 22114438 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| || | |||||||| || | |||||| |||||||| ||||| || Sbjct 22114437 GAGGATGAGGGGTGTTATATGTGCCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGA 22114378 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | || |||||||| |||| Sbjct 22114377 GAAGCTTGCCTCACTCTCT 22114359 >seq256 Length=2651488 Score = 178 bits (196), Expect = 2e-39 Identities = 149/183 (81%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| | |||||| | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 779456 CTTCAAGCCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 779397 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||||||||||||||| || |||||||||||||||||||| || ||||| || | Sbjct 779396 AGGCACCCCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 779337 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 |||| || |||||||| ||| |||||| || ||||||||||| || ||||| || Sbjct 779336 CACCACATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAAGGTCTGC 779277 Query 147162 GGG 147164 ||| Sbjct 779276 GGG 779274 >seq16 Length=28134011 Score = 165 bits (182), Expect = 1e-35 Identities = 197/264 (75%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 146876 TGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGT 146935 ||||||||||||| |||| || | | | ||||||| |||||||||||| | ||| | Sbjct 9569080 TGAGCTTGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGAT 9569139 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | ||||| | || || || |||| || ||||||||||| || ||||| |||| | | Sbjct 9569140 TCAGGTAAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTA 9569199 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 ||| |||||||||||||| | ||||||| |||||||| || | |||||||| Sbjct 9569200 TGTGTTTGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCA-CCCCAGGC 9569258 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115 ||||||| || ||| ||||||| |||||||| || ||||| | || || ||| ||| Sbjct 9569259 CCATGTCTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACT 9569314 Query 147116 GGCACAGGATGTGGCACGGCGGCA 147139 |||| |||| ||||| || |||| Sbjct 9569315 GGCAAAGGACTTGGCAAGGAGGCA 9569338 >seq4 Length=36583390 Score = 165 bits (182), Expect = 1e-35 Identities = 464/701 (66%), Gaps = 11/701 (2%) Strand=Plus/Minus Query 146876 TGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933 ||||||||||||| |||| || | || |||| ||||||| |||||||||||| ||| Sbjct 19718328 TGAGCTTGGGGAAAGGTCTTGGTTCTCTCTGG--AGCTGAACTTTCAGGGGCTCAGTGTG 19718271 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 || || | | | || || |||| || | ||||||| | ||||| ||||| | Sbjct 19718270 ATTCTGGAAAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTAT 19718211 Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 | ||| || || ||||||||| | | | |||||||| ||| |||| || |||||||| Sbjct 19718210 GATGTGTGCGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAG 19718153 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 |||||||| || |||||||| ||||||||||| | ||||| | || |||| | || Sbjct 19718152 GCCCATGTATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAA 19718093 Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 |||||| ||| ||||| || | |||||| | || ||| | || ||| | || Sbjct 19718092 CTGGCAAAGGGCATGGCAGGGAGTTAGCGCCGTCTGAGGAAGGCCTTGTGGATTCTAAGC 19718033 Query 147174 CGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAG 147233 | | | | | ||| | || ||||| | || || || ||||| ||| Sbjct 19718032 GCACATGATGATTCTTCTG-TGTCAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAG 19717974 Query 147234 CTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAG-TCCACGTACCTGGCCCCAAAGT 147292 |||||| || || || || | | || ||| || || ||| |||| | Sbjct 19717973 CTGGTCTACTCCTTGACCTACACCATCTG-AATTCAGATCTTTATATTCTGCCTCAAAAT 19717915 Query 147293 GCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCG 147352 |||||||||| ||||| || ||||| || || || | || | |||| ||| Sbjct 19717914 GCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCA 19717855 Query 147353 CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGA 147412 | | | ||| || ||||||| ||| |||||||| ||||||||||| || | Sbjct 19717854 GGCTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACA 19717795 Query 147413 GCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCC 147472 | || ||| | ||||| || ||| ||| |||| ||| |||| ||| || | | Sbjct 19717794 GTTCTCTAGCATTGGTGGA-TCCTTGATACGCCACAGCAACTCTTCCACAACACCTGTGC 19717736 Query 147473 AAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGT 147532 ||| || | |||||| |||||||| || |||| || ||||| || ||||| Sbjct 19717735 -AAACACACGCTTGGTTGTCAGCAGAGGAAACTCATCTCTCAGGTTGTAGTGTGCCTGCA 19717677 Query 147533 CCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 ||||||| | ||| || || |||||| | | ||||||| Sbjct 19717676 TGCCAAACATGGGCAGGGTACCGGTGCCCATGCAGTCCTCC 19717636 >seq35 Length=20596549 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| |||||||| |||||||| | |||||| |||||| ||||| Sbjct 8448516 AGGGTTACCTGGGATGCCAAGCCTTGTCCGAGATGATCAAATTTTACCTGGAGGTGGTGA 8448575 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| ||||| ||| ||||| |||| |||||||| || |||| Sbjct 8448576 TGCCGAAGGCTGAGAACCAC------------GGCCCCAACATCAAGGAGCACGTGAACT 8448623 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| | ||||| || | |||||||||||| ||| Sbjct 8448624 CCCTGGGGGAAAAGCTGACAACCCTCAGGGCGAGGCTGCGGCGCTGT 8448670 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||| |||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct 8448171 CAAACGAAGGATCAGCTGGACAACATGTTGTTAAATAAGTCCCTGCTGGAGGACTTCAAG 8448230 Query 178233 G 178233 | Sbjct 8448231 G 8448231 >seq1 Length=45942467 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | ||| || ||||||| ||||||| || | |||||||| Sbjct 25098856 GTACTCCCTGGTGTTTGTCACTGGCCTGGTTGGCAACATCCTGGTGGTCTTGGTCCTCAT 25098797 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | | |||||| ||||| ||| ||||||||||| || ||| Sbjct 25098796 GCAATACAAGAGGCTCAGAAGCGTGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 25098737 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | ||||||| || ||||| |||||| ||| Sbjct 25098736 TCTGCTCTTCCTTTTCACGCTGCCCTTCTGGATTGACT 25098699 Score = 107 bits (118), Expect = 2e-18 Identities = 264/399 (66%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| ||||| | || |||||| Sbjct 25169726 GTATTCCCTGGTGTTCATTGTTGGCCTGTTGGGCAATGTGGTGGTGGTGCTGATCCTCAC 25169785 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| || ||||||||| || ||||||||||||| |||| ||||| |||| || ||| Sbjct 25169786 AAAATATGGGAGGCTCAGAATTATGACCAACATCTACCTGCTCAACTTGGCGATTTCTGA 25169845 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||| || || || |||||||||| | || ||||| |||| Sbjct 25169846 CTTGCTCTTTCTAGTCACTCTTCCATTCTGGATTCACT--ATGTTGGATGGAACAAGTGG 25169903 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 || | ||| ||||||||||||| | || ||| || | | |||| Sbjct 25169904 GT----TTTTGGCCATTACATGTGTAAGTTCCTCTCAGGATTTTATCACATAGGCTTGTA 25169959 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || ||| ||||| |||| | |||||||| || || |||| | || Sbjct 25169960 CAGTGAGATCTTTTTCATCGTCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGC 25170019 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| || | || |||||| || | | || ||| | |||| || | |||| Sbjct 25170020 TGTGTTTTCCCTGCGGGTCCGGACTGTCACCTTTGGTATCATAACCAGTATCTTCACCTG 25170079 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTT 9008 | | ||||| | | | | || | || || |||||||| Sbjct 25170080 GGTCCTGGCAGGGCTAGCGGCCCTCCCTGAATTTATCTT 25170118 >seq49 Length=17755568 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 8618 TGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACA 8677 |||| ||| |||||||||| |||| ||||| ||||| | || ||||| | | ||||| Sbjct 6554857 TGGTCTTTCTGTTTGGGCTGCTTGGAAATGCAGTGGTGGTTCTGGTCCTACTGAGGTACA 6554798 Query 8678 AGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGC 8737 || |||||| | |||||| |||| | |||| ||||||||||| | ||||||||| Sbjct 6554797 AGCGGCTCAAGTCCATGACTGACATATACCTGCTCAACCTGGCCATCTCTGACCTGCTCT 6554738 Query 8738 TGATTTTCACCCTCCCCTTTTGG 8760 | | ||| |||| ||||| ||| Sbjct 6554737 TCGTGTTCTCCCTACCCTTCTGG 6554715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583441882567200