Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq26 246 4e-60
seq256 178 2e-39
seq16 165 1e-35
seq4 165 1e-35
seq35 136 5e-27
seq1 123 3e-23
seq49 100 3e-16
>seq26
Length=23966317
Score = 246 bits (272), Expect = 4e-60
Identities = 246/319 (77%), Gaps = 0/319 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||||||||| | | || | ||||||| || || ||| | | |||||| |||
Sbjct 22114677 GTGGTGACCCAGGATGAAAAAGAGCGGTTGAACACACCTGCTTCCTTAAGATGCTCTCTG 22114618
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| ||| ||||| || ||||||| || ||||||||| | ||| | || | |||||
Sbjct 22114617 CAAACTGACCAGGAAGTCTTGATTGTGACATGGCAGAAAGTGAAGGCTACAAGCCCAGAA 22114558
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| ||||||| || ||||| ||||| | |||||||||| |
Sbjct 22114557 AACATGGTCACCTTCAGCAAGAACCACGGAGTTGTGGTTCAGCCTACCTATAAGGACAGG 22114498
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|||||||||| || | |||||| |||| ||||| | || || |||||||||||| |
Sbjct 22114497 GTAAACATCACACATCCGGGACTCAGAAACACAACCTTAACCTTCTGGAATACCACCCTG 22114438
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| |||||||| || | |||||||| || | |||||| |||||||| ||||| ||
Sbjct 22114437 GAGGATGAGGGGTGTTATATGTGCCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGA 22114378
Query 171372 GTGGCCTGCCTCACCCTCT 171390
| || |||||||| ||||
Sbjct 22114377 GAAGCTTGCCTCACTCTCT 22114359
>seq256
Length=2651488
Score = 178 bits (196), Expect = 2e-39
Identities = 149/183 (81%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| | |||||| | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 779456 CTTCAAGCCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 779397
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| ||||||||||||||||| || |||||||||||||||||||| || ||||| || |
Sbjct 779396 AGGCACCCCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 779337
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161
|||| || |||||||| ||| |||||| || ||||||||||| || ||||| ||
Sbjct 779336 CACCACATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAAGGTCTGC 779277
Query 147162 GGG 147164
|||
Sbjct 779276 GGG 779274
>seq16
Length=28134011
Score = 165 bits (182), Expect = 1e-35
Identities = 197/264 (75%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 146876 TGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGT 146935
||||||||||||| |||| || | | | ||||||| |||||||||||| | ||| |
Sbjct 9569080 TGAGCTTGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGAT 9569139
Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995
| ||||| | || || || |||| || ||||||||||| || ||||| |||| | |
Sbjct 9569140 TCAGGTAAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTA 9569199
Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055
||| |||||||||||||| | ||||||| |||||||| || | ||||||||
Sbjct 9569200 TGTGTTTGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCA-CCCCAGGC 9569258
Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115
||||||| || ||| ||||||| |||||||| || ||||| | || || ||| |||
Sbjct 9569259 CCATGTCTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACT 9569314
Query 147116 GGCACAGGATGTGGCACGGCGGCA 147139
|||| |||| ||||| || ||||
Sbjct 9569315 GGCAAAGGACTTGGCAAGGAGGCA 9569338
>seq4
Length=36583390
Score = 165 bits (182), Expect = 1e-35
Identities = 464/701 (66%), Gaps = 11/701 (2%)
Strand=Plus/Minus
Query 146876 TGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933
||||||||||||| |||| || | || |||| ||||||| |||||||||||| |||
Sbjct 19718328 TGAGCTTGGGGAAAGGTCTTGGTTCTCTCTGG--AGCTGAACTTTCAGGGGCTCAGTGTG 19718271
Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993
|| || | | | || || |||| || | ||||||| | ||||| ||||| |
Sbjct 19718270 ATTCTGGAAAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTAT 19718211
Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053
| ||| || || ||||||||| | | | |||||||| ||| |||| || ||||||||
Sbjct 19718210 GATGTGTGCGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAG 19718153
Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113
|||||||| || |||||||| ||||||||||| | ||||| | || |||| | ||
Sbjct 19718152 GCCCATGTATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAA 19718093
Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173
|||||| ||| ||||| || | |||||| | || ||| | || ||| | ||
Sbjct 19718092 CTGGCAAAGGGCATGGCAGGGAGTTAGCGCCGTCTGAGGAAGGCCTTGTGGATTCTAAGC 19718033
Query 147174 CGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAG 147233
| | | | | ||| | || ||||| | || || || ||||| |||
Sbjct 19718032 GCACATGATGATTCTTCTG-TGTCAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAG 19717974
Query 147234 CTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAG-TCCACGTACCTGGCCCCAAAGT 147292
|||||| || || || || | | || ||| || || ||| |||| |
Sbjct 19717973 CTGGTCTACTCCTTGACCTACACCATCTG-AATTCAGATCTTTATATTCTGCCTCAAAAT 19717915
Query 147293 GCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCG 147352
|||||||||| ||||| || ||||| || || || | || | |||| |||
Sbjct 19717914 GCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCA 19717855
Query 147353 CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGA 147412
| | | ||| || ||||||| ||| |||||||| ||||||||||| || |
Sbjct 19717854 GGCTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACA 19717795
Query 147413 GCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCC 147472
| || ||| | ||||| || ||| ||| |||| ||| |||| ||| || | |
Sbjct 19717794 GTTCTCTAGCATTGGTGGA-TCCTTGATACGCCACAGCAACTCTTCCACAACACCTGTGC 19717736
Query 147473 AAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGT 147532
||| || | |||||| |||||||| || |||| || ||||| || |||||
Sbjct 19717735 -AAACACACGCTTGGTTGTCAGCAGAGGAAACTCATCTCTCAGGTTGTAGTGTGCCTGCA 19717677
Query 147533 CCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573
||||||| | ||| || || |||||| | | |||||||
Sbjct 19717676 TGCCAAACATGGGCAGGGTACCGGTGCCCATGCAGTCCTCC 19717636
>seq35
Length=20596549
Score = 136 bits (150), Expect = 5e-27
Identities = 129/167 (77%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||| ||||| |||||||| |||||||| | |||||| |||||| |||||
Sbjct 8448516 AGGGTTACCTGGGATGCCAAGCCTTGTCCGAGATGATCAAATTTTACCTGGAGGTGGTGA 8448575
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| |||| ||||| ||| ||||| |||| |||||||| || ||||
Sbjct 8448576 TGCCGAAGGCTGAGAACCAC------------GGCCCCAACATCAAGGAGCACGTGAACT 8448623
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| | ||||| || | |||||||||||| |||
Sbjct 8448624 CCCTGGGGGAAAAGCTGACAACCCTCAGGGCGAGGCTGCGGCGCTGT 8448670
Score = 84.2 bits (92), Expect = 3e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232
|||| |||||| |||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 8448171 CAAACGAAGGATCAGCTGGACAACATGTTGTTAAATAAGTCCCTGCTGGAGGACTTCAAG 8448230
Query 178233 G 178233
|
Sbjct 8448231 G 8448231
>seq1
Length=45942467
Score = 123 bits (136), Expect = 3e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||||||| | ||| || ||||||| ||||||| || | ||||||||
Sbjct 25098856 GTACTCCCTGGTGTTTGTCACTGGCCTGGTTGGCAACATCCTGGTGGTCTTGGTCCTCAT 25098797
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| |||||||||||||| | | |||||| ||||| ||| ||||||||||| || |||
Sbjct 25098796 GCAATACAAGAGGCTCAGAAGCGTGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 25098737
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||||| | ||||||| || ||||| |||||| |||
Sbjct 25098736 TCTGCTCTTCCTTTTCACGCTGCCCTTCTGGATTGACT 25098699
Score = 107 bits (118), Expect = 2e-18
Identities = 264/399 (66%), Gaps = 6/399 (2%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| | |||| || | ||||||| ||||| | || ||||||
Sbjct 25169726 GTATTCCCTGGTGTTCATTGTTGGCCTGTTGGGCAATGTGGTGGTGGTGCTGATCCTCAC 25169785
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| || ||||||||| || ||||||||||||| |||| ||||| |||| || |||
Sbjct 25169786 AAAATATGGGAGGCTCAGAATTATGACCAACATCTACCTGCTCAACTTGGCGATTTCTGA 25169845
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | |||| || || || |||||||||| | || ||||| ||||
Sbjct 25169846 CTTGCTCTTTCTAGTCACTCTTCCATTCTGGATTCACT--ATGTTGGATGGAACAAGTGG 25169903
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|| | ||| ||||||||||||| | || ||| || | | ||||
Sbjct 25169904 GT----TTTTGGCCATTACATGTGTAAGTTCCTCTCAGGATTTTATCACATAGGCTTGTA 25169959
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
||| || || | || ||| ||||| |||| | |||||||| || || |||| | ||
Sbjct 25169960 CAGTGAGATCTTTTTCATCGTCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCATGC 25170019
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| || | || |||||| || | | || ||| | |||| || | ||||
Sbjct 25170020 TGTGTTTTCCCTGCGGGTCCGGACTGTCACCTTTGGTATCATAACCAGTATCTTCACCTG 25170079
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTT 9008
| | ||||| | | | | || | || || ||||||||
Sbjct 25170080 GGTCCTGGCAGGGCTAGCGGCCCTCCCTGAATTTATCTT 25170118
>seq49
Length=17755568
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 8618 TGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACA 8677
|||| ||| |||||||||| |||| ||||| ||||| | || ||||| | | |||||
Sbjct 6554857 TGGTCTTTCTGTTTGGGCTGCTTGGAAATGCAGTGGTGGTTCTGGTCCTACTGAGGTACA 6554798
Query 8678 AGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGC 8737
|| |||||| | |||||| |||| | |||| ||||||||||| | |||||||||
Sbjct 6554797 AGCGGCTCAAGTCCATGACTGACATATACCTGCTCAACCTGGCCATCTCTGACCTGCTCT 6554738
Query 8738 TGATTTTCACCCTCCCCTTTTGG 8760
| | ||| |||| ||||| |||
Sbjct 6554737 TCGTGTTCTCCCTACCCTTCTGG 6554715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583441882567200
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