Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq131 125 6e-24
seq40 96.9 3e-15
>seq131
Length=8015323
Score = 125 bits (138), Expect = 6e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | || ||| || | || ||||||||||| || |||||
Sbjct 2518450 CTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAA 2518509
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||| ||||||||| | ||||| || |||||||| ||||||| ||| | | |
Sbjct 2518510 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 2518569
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | || || || | ||||| || ||||| ||||| || |||||
Sbjct 2518570 CTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCAC 2518629
Query 35725 AAATATCTGCATTC 35738
|| ||||||||||
Sbjct 2518630 GAAGATCTGCATTC 2518643
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 35591 TGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATC 35650
|| || || ||||| ||||||| ||||||||| | ||| | || |||||||| ||||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 35651 TTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCC 35710
||| ||| | | | | ||||| || | |||||||| | ||||| |||||||||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 35711 GTCAAAGTTTTCACAAATATCTGCATT 35737
|| || ||||||||||| |||||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq40
Length=19935044
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || | || ||||||||||| || |||||
Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | ||| | || || || ||| |||||| ||| | |
Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTT 1219111
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | ||||||||||| ||||| || || ||||| | || || ||
Sbjct 1219110 CTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTAC 1219051
Query 35725 AAATATCTGCATTCTG 35740
|| || |||||||||
Sbjct 1219050 GAAAATTTGCATTCTG 1219035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450757970400840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |