Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq131 109 6e-19
seq40 98.7 1e-15
seq175 95.1 1e-14
seq59 91.5 1e-13
>seq131
Length=8015323
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| || | |||| || ||||| |||||||| || || || |||||||||||
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||| ||||| ||||| ||||| | |||||| || || ||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|||||||| || ||||| || ||| ||||| || | ||||| | || ||
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| || || || || |||||||| || || || ||||| || ||||||
Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627
||||| || ||||| ||||| | |||||| || || || |||||||| || ||||| ||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687
||| ||||| || | ||||| | ||||| || || || |||||||||||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 134688 GTTAAAGTTTTAACGAAAATTTGCATT 134714
||||| ||||| || || || ||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq40
Length=19935044
Score = 98.7 bits (108), Expect = 1e-15
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || ||||| || ||||||||||| || ||| | || || |||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
||||||||||| || | | |||||| || || || ||||||||||| || || || ||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || || | ||||| | |||||| || || || ||||| || || |||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717
| || || ||||||||||||||| ||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATTCTG 1219035
>seq175
Length=5584636
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|||| | |||| || || || || || |||||||||||||||||||| | || |
Sbjct 1836516 AGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGT 1836457
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || || | |||||| ||||| |||| | ||| ||||| || | || ||||||
Sbjct 1836456 CCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCT 1836397
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||| || || | ||| || || | ||| | || |||||
Sbjct 1836396 TTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTG 1836337
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || ||| ||||| || ||||| ||||| |||
Sbjct 1836336 ATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTTG 1836295
>seq59
Length=15706754
Score = 91.5 bits (100), Expect = 1e-13
Identities = 102/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563
||| ||||| | ||||| || || |||||||||||||| | |||||| ||| ||
Sbjct 4366158 CACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTC-TAGAGAGTGTGATTGTCCTC 4366216
Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623
|||| |||||||| || | ||| ||||||||| ||||| | ||||| || || |||||
Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276
Query 134624 AATTTTTTGTTTGAC 134638
||||| ||||||
Sbjct 4366277 GATTTTGGCTTTGAC 4366291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505358454573960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |