Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq21 109 8e-19 >seq21 Length=24716270 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| || || || || || || |||||||||||||| || | | | | ||| | | Sbjct 24232429 AGATAATCGATGGAGAGGTTTATCCTCCTACCGTCAAAGATACTCAGGCAGAGATGATCT 24232370 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || || || || || | | || || || |||| ||||| | ||||| || | Sbjct 24232369 ACCCGCCTCATGTCCCTGAGCACCTGCGGTTTGCTGTGGGCCACGAGGTCTTTGGTCTGG 24232310 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| ||| | ||| ||||||||| || ||||| | ||||| ||||| || ||||| | Sbjct 24232309 TGCCTGGTCTGATGATGTACGCCACAATTTGGCTTCGGGAGCATAACAGAGTGTGCGATG 24232250 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| ||||| ||||| || || ||| | || || ||| ||||||||| Sbjct 24232249 TGCTTAAACAGGAGCATCCAGAGTGGGATGATGAGCAGTTGTTCCAGA 24232202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723283628951520