Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq87 206 2e-48
seq23 109 4e-19
seq256 98.7 8e-16
seq9 95.1 1e-14
>seq87
Length=11743621
Score = 206 bits (228), Expect = 2e-48
Identities = 565/852 (66%), Gaps = 44/852 (5%)
Strand=Plus/Minus
Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|||||| || ||||| ||||| || ||||| || | || |||||||| || || || |
Sbjct 8843004 TCATGATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCT 8842945
Query 43783 TGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
||| | | || ||| | ||||| ||| || | || || |||||| | |||||
Sbjct 8842944 GGATCTTTCCAAGGACATTCAGCAC--TGGGAAGCCCTGAAGCCTAAAGAAAGATATTTT 8842887
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900
| ||| ||| |||| || ||||| || ||||| || ||| | |||||||| ||| |
Sbjct 8842886 ACATCACATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTG 8842827
Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959
|| ||| ||| ||||||| ||||| |||||| | ||| | ||||| || |||||
Sbjct 8842826 GTGCGATTTAGCCAACAAGTTCAGATTAC-AGAAGCCTGCTGTCTCTATGGCTTCCAAAT 8842768
Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||| || ||||| || ||||| |||||||||| ||| || | || || ||||| |||||
Sbjct 8842767 TGCAATGGAAAACATACATTCTGAAATGTACAATCTCCTTACTGACACTTACATTAAAGA 8842708
Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079
| | || | | | | || ||||| || ||| || | ||| | || | ||
Sbjct 8842707 TTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTGAA-CAATGCCTTGTGTAAAGAAGAA 8842649
Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGT 44136
||||| |||||| | | ||||| ||| || || | ||| | | |||
Sbjct 8842648 GGCAGATTGGGCCTTGCATTGGATCGGGGAAAAAGAAGCTACCTATGGTAAGTGTGATGT 8842589
Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196
|| ||||| | ||||| || |||||||| || || ||||| ||||||| || |
Sbjct 8842588 AGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGACT 8842529
Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256
||||||||||| || |||||||| | || | ||| ||||| || || || | |||||
Sbjct 8842528 CAAGAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGATGA 8842469
Query 44257 AGGCTTACATTGCGATTTTGCTTGCTT---GTT-----ACTTGGATATCTAGGAGACGAT 44308
| ||||| || || ||| | ||| | ||| ||||| ||| |
Sbjct 8842468 GAGTTTACACTGTGACTTTACCTGCATAGCGTTCAAACACTTG-----CTA------CAC 8842420
Query 44309 AAGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAG 44366
|| |||| || | ||| | | | ||| || || | | || || | ||||||| | |
Sbjct 8842419 AAACCTT--TGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTAGGATAGAATAGG 8842362
Query 44367 AATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAAC 44425
| | | || || || | ||| || | || ||||||| || || ||| |||||
Sbjct 8842361 AGCTCCTTACTGAGGCCTTGCATGTGAAGCTTATCAGAATGAATTGCAC-TTTAATGAAG 8842303
Query 44426 CAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT 44485
|| || |||| | | ||||| | || | |||||||||||| | |||| |
Sbjct 8842302 CAGTACATTGCGT-TGTAGCAGAGAGACTAATGCTGGAACTGGGTT----TTAACAAGGT 8842248
Query 44486 ATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541
||| ||| |||| || ||||| |||||||| |||||||| |||||| | ||| ||
Sbjct 8842247 ATTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACAGGAAGGGAGAACTAA 8842188
Query 44542 CTTTTTTGAAAA 44553
||| || || ||
Sbjct 8842187 CTTCTTCGAGAA 8842176
>seq23
Length=24341844
Score = 109 bits (120), Expect = 4e-19
Identities = 91/109 (83%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 8998622 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 8998564
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 8998563 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 8998515
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
||||| || |||| || ||||||| || ||||| || |||||||| || || |||||
Sbjct 8996178 GGAGAGCGTGTTGTAGCCTTTGCAGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 8996119
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| || ||||||||| | || ||||| ||||| |
Sbjct 8996118 TCGATATTCTGGCTCAAGAAACGAGGATTAATGCCTGGGCTCACATTTTCCAATGAACTT 8996059
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 8996058 ATTAGCAGAGATGA 8996045
Score = 86.0 bits (94), Expect = 5e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
||||| | ||||||||| | |||||||| ||||| ||| |||| ||||| || |||
Sbjct 8999598 TTGCTGAGAGAAAATCCCCGCCGCTTTGTCGTCTTTCCTATTGAATACCATGATATTTGG 8999539
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|| ||||| || ||||| |||| || ||||||||||| || || ||
Sbjct 8999538 CAGATGTATAAGAAAGCCGAGGCTTCCTTTTGGACAGCTGAGGAGGT 8999492
>seq256
Length=2651488
Score = 98.7 bits (108), Expect = 8e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107
|||||| |||| || || || | || ||||| || || |||||||| |||||
Sbjct 779291 GATGGCGCTGCCTCCCTGCCACGCCCTTTGCCAGTTCTATGTGGTGAATGGTGAGCTGTC 779350
Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167
|| || |||| || || ||||| |||||||| || ||||| || || ||||| || ||
Sbjct 779351 CTGCCAGCTGTACCAGAGGTCAGGCGACATGGGCCTGGGGGTGCCTTTCAACATCGCCAG 779410
Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204
|| || |||||||| || |||||||||||| | |||
Sbjct 779411 CTACGCCCTGCTCACCTACATGATTGCACACATCACC 779447
>seq9
Length=34412642
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || |||||||
Sbjct 15817854 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAAA 15817913
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 15817914 AACGAGTTTCAGAGTATCAGCG 15817935
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | ||||| || || || | ||| || ||| ||||||| ||||| |||||||
Sbjct 15794120 GGTTTGTCATCTTTCCCATCCAGTACCCTGATATTTGGAAAATGTATAAAAAGGCACAGG 15794179
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 15794180 CATCCTTCTGGACAGCAGAAGAGGT 15794204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397425371419615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |