Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq87 206 2e-48 seq23 109 4e-19 seq256 98.7 8e-16 seq9 95.1 1e-14 >seq87 Length=11743621 Score = 206 bits (228), Expect = 2e-48 Identities = 565/852 (66%), Gaps = 44/852 (5%) Strand=Plus/Minus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||||| ||||| || ||||| || | || |||||||| || || || | Sbjct 8843004 TCATGATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCT 8842945 Query 43783 TGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 ||| | | || ||| | ||||| ||| || | || || |||||| | ||||| Sbjct 8842944 GGATCTTTCCAAGGACATTCAGCAC--TGGGAAGCCCTGAAGCCTAAAGAAAGATATTTT 8842887 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 | ||| ||| |||| || ||||| || ||||| || ||| | |||||||| ||| | Sbjct 8842886 ACATCACATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTG 8842827 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 || ||| ||| ||||||| ||||| |||||| | ||| | ||||| || ||||| Sbjct 8842826 GTGCGATTTAGCCAACAAGTTCAGATTAC-AGAAGCCTGCTGTCTCTATGGCTTCCAAAT 8842768 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| || ||||| || ||||| |||||||||| ||| || | || || ||||| ||||| Sbjct 8842767 TGCAATGGAAAACATACATTCTGAAATGTACAATCTCCTTACTGACACTTACATTAAAGA 8842708 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | || | | | | || ||||| || ||| || | ||| | || | || Sbjct 8842707 TTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTGAA-CAATGCCTTGTGTAAAGAAGAA 8842649 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGT 44136 ||||| |||||| | | ||||| ||| || || | ||| | | ||| Sbjct 8842648 GGCAGATTGGGCCTTGCATTGGATCGGGGAAAAAGAAGCTACCTATGGTAAGTGTGATGT 8842589 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||| | ||||| || |||||||| || || ||||| ||||||| || | Sbjct 8842588 AGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGACT 8842529 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| || |||||||| | || | ||| ||||| || || || | ||||| Sbjct 8842528 CAAGAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGATGA 8842469 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTT---GTT-----ACTTGGATATCTAGGAGACGAT 44308 | ||||| || || ||| | ||| | ||| ||||| ||| | Sbjct 8842468 GAGTTTACACTGTGACTTTACCTGCATAGCGTTCAAACACTTG-----CTA------CAC 8842420 Query 44309 AAGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAG 44366 || |||| || | ||| | | | ||| || || | | || || | ||||||| | | Sbjct 8842419 AAACCTT--TGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTAGGATAGAATAGG 8842362 Query 44367 AATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAAC 44425 | | | || || || | ||| || | || ||||||| || || ||| ||||| Sbjct 8842361 AGCTCCTTACTGAGGCCTTGCATGTGAAGCTTATCAGAATGAATTGCAC-TTTAATGAAG 8842303 Query 44426 CAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT 44485 || || |||| | | ||||| | || | |||||||||||| | |||| | Sbjct 8842302 CAGTACATTGCGT-TGTAGCAGAGAGACTAATGCTGGAACTGGGTT----TTAACAAGGT 8842248 Query 44486 ATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 ||| ||| |||| || ||||| |||||||| |||||||| |||||| | ||| || Sbjct 8842247 ATTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACAGGAAGGGAGAACTAA 8842188 Query 44542 CTTTTTTGAAAA 44553 ||| || || || Sbjct 8842187 CTTCTTCGAGAA 8842176 >seq23 Length=24341844 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 8998622 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 8998564 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 8998563 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 8998515 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || |||| || ||||||| || ||||| || |||||||| || || ||||| Sbjct 8996178 GGAGAGCGTGTTGTAGCCTTTGCAGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 8996119 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| || ||||||||| | || ||||| ||||| | Sbjct 8996118 TCGATATTCTGGCTCAAGAAACGAGGATTAATGCCTGGGCTCACATTTTCCAATGAACTT 8996059 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 8996058 ATTAGCAGAGATGA 8996045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | ||||||||| | |||||||| ||||| ||| |||| ||||| || ||| Sbjct 8999598 TTGCTGAGAGAAAATCCCCGCCGCTTTGTCGTCTTTCCTATTGAATACCATGATATTTGG 8999539 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 || ||||| || ||||| |||| || ||||||||||| || || || Sbjct 8999538 CAGATGTATAAGAAAGCCGAGGCTTCCTTTTGGACAGCTGAGGAGGT 8999492 >seq256 Length=2651488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || || | || ||||| || || |||||||| ||||| Sbjct 779291 GATGGCGCTGCCTCCCTGCCACGCCCTTTGCCAGTTCTATGTGGTGAATGGTGAGCTGTC 779350 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || || |||| || || ||||| |||||||| || ||||| || || ||||| || || Sbjct 779351 CTGCCAGCTGTACCAGAGGTCAGGCGACATGGGCCTGGGGGTGCCTTTCAACATCGCCAG 779410 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204 || || |||||||| || |||||||||||| | ||| Sbjct 779411 CTACGCCCTGCTCACCTACATGATTGCACACATCACC 779447 >seq9 Length=34412642 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||||| Sbjct 15817854 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAAA 15817913 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 15817914 AACGAGTTTCAGAGTATCAGCG 15817935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | ||||| || || || | ||| || ||| ||||||| ||||| ||||||| Sbjct 15794120 GGTTTGTCATCTTTCCCATCCAGTACCCTGATATTTGGAAAATGTATAAAAAGGCACAGG 15794179 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 15794180 CATCCTTCTGGACAGCAGAAGAGGT 15794204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425371419615