Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq102 84.2 3e-11 seq88 82.4 1e-10 >seq102 Length=10627846 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 |||||||| | ||||| | || ||||| || ||||| || |||||| || | Sbjct 1346561 TGACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAG 1346502 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 | ||||||| |||||||| || | |||| | || ||||| |||| |||| ||| Sbjct 1346501 TATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGT 1346442 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 | |||||| || | | |||||||||||||||||| | || || ||||| | ||| | Sbjct 1346441 TGCTCTTCCAATTATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAG 1346382 Query 111399 A 111399 | Sbjct 1346381 A 1346381 >seq88 Length=11737398 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| |||||||| || | |||| | || || || || Sbjct 370047 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 370106 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| || || | |||||||||||||||||| || || || Sbjct 370107 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACC 370166 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 370167 TGTCTCTGTCTGAGA 370181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627982361920800