Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq256 102 6e-17 seq4 84.2 2e-11 >seq256 Length=2651488 Score = 102 bits (112), Expect = 6e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 111771 CTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAA 111830 || ||| || |||||||||||||||||||| ||||| || ||| || || ||||| || Sbjct 779456 CTTCAAGCCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 779397 Query 111831 TGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTG 111890 ||||| || |||||||| || || || || || || ||||| || || || | | | Sbjct 779396 AGGCACCCCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 779337 Query 111891 TGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 |||||| || || ||||| | || || ||||||| |||||| Sbjct 779336 CACCACATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATC 779291 >seq4 Length=36583390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| ||||||||||| || || || | ||||| ||||| ||||||||| | ||| Sbjct 19717823 ATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGATACG 19717765 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||| ||||| ||||||||||| ||| | || |||| | || || || ||||| ||||| Sbjct 19717764 CCACAGCAACTCTTCCACAACACCTGTGCA-AACACACGCTTGGTTGTCAGCAGAGGAAA 19717706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391915396059649