Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq49 104 3e-17
seq54 100 3e-16
seq9 89.7 6e-13
>seq49
Length=17755568
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 13816950 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 13816891
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| ||||||||||| |||||||| || |||
Sbjct 13816890 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13816831
Query 117425 ATCGT 117429
|| ||
Sbjct 13816830 ATAGT 13816826
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| ||||| || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 13816950 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 13816891
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | |||||| ||||| || ||||||||||||||||||
Sbjct 13816890 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13816831
Query 152149 ATCGT 152153
|| ||
Sbjct 13816830 ATAGT 13816826
>seq54
Length=17271413
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| |||||||||||| || | ||||| || ||
Sbjct 16656363 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGTAGCCTGGTACCAAACTGA 16656422
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| |
Sbjct 16656423 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 16656482
Query 117425 ATCGT 117429
|| ||
Sbjct 16656483 ATGGT 16656487
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | ||||||||||| |||| || ||||||||
Sbjct 16656363 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGTAGCCTGGTACCAAACTGA 16656422
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| | |||||| || || ||| |||||| ||||||||||||||||| | |
Sbjct 16656423 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 16656482
Query 152149 ATCGT 152153
|| ||
Sbjct 16656483 ATGGT 16656487
>seq9
Length=34412642
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | ||| ||||||||||| || | |||||
Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| | ||| || || ||| || || || |||||| || ||||| ||| |||||||
Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715
Query 74890 CGAC 74893
| ||
Sbjct 15801714 CTAC 15801711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547172749415400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |