Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq49 104 3e-17 seq54 100 3e-16 seq9 89.7 6e-13 >seq49 Length=17755568 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 13816950 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 13816891 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 13816890 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13816831 Query 117425 ATCGT 117429 || || Sbjct 13816830 ATAGT 13816826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 13816950 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 13816891 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 13816890 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13816831 Query 152149 ATCGT 152153 || || Sbjct 13816830 ATAGT 13816826 >seq54 Length=17271413 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| |||||||||||| || | ||||| || || Sbjct 16656363 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGTAGCCTGGTACCAAACTGA 16656422 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| | Sbjct 16656423 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 16656482 Query 117425 ATCGT 117429 || || Sbjct 16656483 ATGGT 16656487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| |||| || |||||||| Sbjct 16656363 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGTAGCCTGGTACCAAACTGA 16656422 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | |||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 16656423 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 16656482 Query 152149 ATCGT 152153 || || Sbjct 16656483 ATGGT 16656487 >seq9 Length=34412642 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | ||| ||||||||||| || | ||||| Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715 Query 74890 CGAC 74893 | || Sbjct 15801714 CTAC 15801711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547172749415400