Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 120 3e-22 seq175 111 2e-19 seq113 104 3e-17 seq59 100 3e-16 seq209 98.7 1e-15 seq49 91.5 2e-13 seq122 89.7 6e-13 seq88 89.7 6e-13 >seq24 Length=24352400 Score = 120 bits (132), Expect = 3e-22 Identities = 145/196 (74%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| | ||||| || | |||||||| || || | ||||||||| | || Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC-CTCCAGACCA 27524 || | ||| | || | || || ||||| |||||||||||||| || | | || ||||| Sbjct 13199115 GACACCATCGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACCA 13199056 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| ||| |||| ||| || || || || ||||||| || || || |||| ||||| Sbjct 13199055 GCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATAA 13198996 Query 27585 TGTCCAAAAGGAATCC 27600 |||| ||| | ||| Sbjct 13198995 CATCCAGAAGCAGTCC 13198980 >seq175 Length=5584636 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || | || ||||| || |||||||||| ||| | Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || || ||||| || || |||||| |||| || || Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || |||| || |||| | ||| | ||||| || Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 | |||||||| || ||||||||||| || | | | ||||| Sbjct 1836479 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTAGAGACTTCG 1836519 >seq113 Length=9683949 Score = 104 bits (114), Expect = 3e-17 Identities = 162/227 (71%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || | || || || | | ||||| || ||||| ||||||| || Sbjct 8524106 AATGCAGATTTTCATAAATACCCTAATGGAGAAGACCATCACTCTCAAGGTTGAA-CACT 8524048 Query 27465 TG-ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || ||| || | |||| | ||||| || || ||||| ||||| ||||||||||| || Sbjct 8524047 TGGATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCC--TCC 8523990 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || ||||||| | ||||| || |||| |||||| | | ||||| | Sbjct 8523989 AGCAGAGACTGATCTTTGCTGACTAACAACTGGAAGATGGACGTACCTTGTCTGACTACA 8523930 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | | ||||| || ||||||||||| || ||| | ||| | ||| Sbjct 8523929 ACATTC-TAAGGAGTCAACTCTTCATCTTGTGTTGAGACTTTGTGGT 8523884 >seq59 Length=15706754 Score = 100 bits (110), Expect = 3e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||| || || |||||||| || ||||||||| | ||| | || Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| || | || || ||||| || ||||||||||| || | || |||||| Sbjct 4366306 GACATCATCAAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCAG 4366247 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| | | || | || || | || ||||| ||| || || |||||| || Sbjct 4366246 CAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCT-CTAGACTACAAC 4366188 Query 27586 GTCCAAAAGGAATCCAC 27602 | || || || ||||| Sbjct 4366187 ATTCAGAAAGAGTCCAC 4366171 >seq209 Length=4208363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| | |||| || || |||||||| || || || ||||| || | | Sbjct 4009660 AATGCAAATCTTCATAAAGATCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 4009601 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | |||||||| | ||||| || || || || ||||| ||||| Sbjct 4009600 GGACACCATTGAGAACATAAAGGCTAAGCTCCAGGATAAAGAAGGCATCCCTCCTGACCA 4009541 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| ||| | || | ||||| || Sbjct 4009540 GCAGAGGCTCATCTTTGCAGGCAAGCACCT-GAAGATGGTCG--CACTTTCTGACTACAA 4009484 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || | ||| | |||| | ||||| Sbjct 4009483 CATCCA----GAGTCAACTCTGCACCGTGTCCTTTGTCTGAGGGGTGG 4009440 >seq49 Length=17755568 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | |||||||| |||| Sbjct 13816826 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTACTTCAGCCT 13816885 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | |||||||| Sbjct 13816886 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTACATT 13816945 Query 32245 TTCAC 32249 ||||| Sbjct 13816946 TTCAC 13816950 >seq122 Length=8875436 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || ||||| ||||| ||| | || Sbjct 4650766 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 4650707 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | || || ||||| || ||||||||||| Sbjct 4650706 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 4650663 >seq88 Length=11737398 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 ||| |||| || ||||| ||||||| || | || ||||| |||||||| | |||| Sbjct 370060 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 370119 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || ||| || || | ||||||||| ||||||||||||||| ||||| ||| Sbjct 370120 TTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 370179 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGA 81112 |||| | |||||| | ||||| || | || || || || ||||||| Sbjct 370180 GACTCAATGATGGCATACCAAAGCTGCTGTGCTTTTACAACTTTGCGGA 370228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265324091760