Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq24 120 3e-22
seq175 111 2e-19
seq113 104 3e-17
seq59 100 3e-16
seq209 98.7 1e-15
seq49 91.5 2e-13
seq122 89.7 6e-13
seq88 89.7 6e-13
>seq24
Length=24352400
Score = 120 bits (132), Expect = 3e-22
Identities = 145/196 (74%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| | ||||| || | |||||||| || || | ||||||||| | ||
Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC-CTCCAGACCA 27524
|| | ||| | || | || || ||||| |||||||||||||| || | | || |||||
Sbjct 13199115 GACACCATCGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACCA 13199056
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| ||| |||| ||| || || || || ||||||| || || || |||| |||||
Sbjct 13199055 GCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATAA 13198996
Query 27585 TGTCCAAAAGGAATCC 27600
|||| ||| | |||
Sbjct 13198995 CATCCAGAAGCAGTCC 13198980
>seq175
Length=5584636
Score = 111 bits (122), Expect = 2e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || || | || ||||| || |||||||||| ||| |
Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | || || || || ||||| || || |||||| |||| || ||
Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| || |||| || |||| | ||| | ||||| ||
Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626
| |||||||| || ||||||||||| || | | | |||||
Sbjct 1836479 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTAGAGACTTCG 1836519
>seq113
Length=9683949
Score = 104 bits (114), Expect = 3e-17
Identities = 162/227 (71%), Gaps = 5/227 (2%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || | || || || | | ||||| || ||||| ||||||| ||
Sbjct 8524106 AATGCAGATTTTCATAAATACCCTAATGGAGAAGACCATCACTCTCAAGGTTGAA-CACT 8524048
Query 27465 TG-ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| ||| || | |||| | ||||| || || ||||| ||||| ||||||||||| ||
Sbjct 8524047 TGGATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCC--TCC 8523990
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
||||| | || || ||||||| | ||||| || |||| |||||| | | ||||| |
Sbjct 8523989 AGCAGAGACTGATCTTTGCTGACTAACAACTGGAAGATGGACGTACCTTGTCTGACTACA 8523930
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630
| | | ||||| || ||||||||||| || ||| | ||| | |||
Sbjct 8523929 ACATTC-TAAGGAGTCAACTCTTCATCTTGTGTTGAGACTTTGTGGT 8523884
>seq59
Length=15706754
Score = 100 bits (110), Expect = 3e-16
Identities = 141/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||| || || |||||||| || ||||||||| | ||| | ||
Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| || | || || ||||| || ||||||||||| || | || ||||||
Sbjct 4366306 GACATCATCAAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCAG 4366247
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| | | || | || || | || ||||| ||| || || |||||| ||
Sbjct 4366246 CAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCT-CTAGACTACAAC 4366188
Query 27586 GTCCAAAAGGAATCCAC 27602
| || || || |||||
Sbjct 4366187 ATTCAGAAAGAGTCCAC 4366171
>seq209
Length=4208363
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 7/228 (3%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| | |||| || || |||||||| || || || ||||| || | |
Sbjct 4009660 AATGCAAATCTTCATAAAGATCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 4009601
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| || | |||||||| | ||||| || || || || ||||| |||||
Sbjct 4009600 GGACACCATTGAGAACATAAAGGCTAAGCTCCAGGATAAAGAAGGCATCCCTCCTGACCA 4009541
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| ||| | || | ||||| ||
Sbjct 4009540 GCAGAGGCTCATCTTTGCAGGCAAGCACCT-GAAGATGGTCG--CACTTTCTGACTACAA 4009484
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || | ||| | |||| | |||||
Sbjct 4009483 CATCCA----GAGTCAACTCTGCACCGTGTCCTTTGTCTGAGGGGTGG 4009440
>seq49
Length=17755568
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||| || | |||||||||||||| || || ||| | |||||||| ||||
Sbjct 13816826 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTACTTCAGCCT 13816885
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || ||||| |||||||| |||||||| ||| | ||||||||
Sbjct 13816886 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTACATT 13816945
Query 32245 TTCAC 32249
|||||
Sbjct 13816946 TTCAC 13816950
>seq122
Length=8875436
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || ||||||||||| || ||||| ||||| ||| | ||
Sbjct 4650766 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 4650707
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | ||| | || || ||||| || |||||||||||
Sbjct 4650706 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 4650663
>seq88
Length=11737398
Score = 89.7 bits (98), Expect = 6e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003
||| |||| || ||||| ||||||| || | || ||||| |||||||| | ||||
Sbjct 370060 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 370119
Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063
|| ||| || || | ||||||||| ||||||||||||||| ||||| |||
Sbjct 370120 TTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 370179
Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGA 81112
|||| | |||||| | ||||| || | || || || || |||||||
Sbjct 370180 GACTCAATGATGGCATACCAAAGCTGCTGTGCTTTTACAACTTTGCGGA 370228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570265324091760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |