Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq30 123 3e-23 >seq30 Length=22861086 Score = 123 bits (136), Expect = 3e-23 Identities = 203/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 32808 ATTAAATGGTTTGCAGGAGGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACAT 32867 ||||| ||| | ||||| ||||| |||||||||||||| ||| | ||||| ||||| ||| Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273 Query 32868 GTTATAATGTATAGTTATTACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTA 32927 || || ||||| || || || ||||| ||| | || || | | | || ||||| Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213 Query 32928 TGGTGGAAAAAATATTTAACTATCATACAATTGATGCAGTTTCATTTAGCAATAGGTCAT 32987 ||||||||| | || | || || | || || | ||||| ||| | | | || || Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153 Query 32988 ACAGCAATGTCTATATATATAGATTGTCCGTTCCCTAGATGGATACAGTGGGCTGTTATT 33047 |||||| |||| | | | ||| | || ||||| | |||||| || |||||||| | | Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093 Query 33048 ATATATTCTATCACCTTTATCATCCTTTTTGGCAACTTTTATCTCAGGACATA 33100 | || | || | ||| || ||| ||| | ||||| | | | ||||||| Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATA 6194040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603133126097520