Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq30 123 3e-23
>seq30
Length=22861086
Score = 123 bits (136), Expect = 3e-23
Identities = 203/293 (69%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 32808 ATTAAATGGTTTGCAGGAGGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACAT 32867
||||| ||| | ||||| ||||| |||||||||||||| ||| | ||||| ||||| |||
Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273
Query 32868 GTTATAATGTATAGTTATTACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTA 32927
|| || ||||| || || || ||||| ||| | || || | | | || |||||
Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTC 6194213
Query 32928 TGGTGGAAAAAATATTTAACTATCATACAATTGATGCAGTTTCATTTAGCAATAGGTCAT 32987
||||||||| | || | || || | || || | ||||| ||| | | | || ||
Sbjct 6194212 TGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGACAC 6194153
Query 32988 ACAGCAATGTCTATATATATAGATTGTCCGTTCCCTAGATGGATACAGTGGGCTGTTATT 33047
|||||| |||| | | | ||| | || ||||| | |||||| || |||||||| | |
Sbjct 6194152 ACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAACT 6194093
Query 33048 ATATATTCTATCACCTTTATCATCCTTTTTGGCAACTTTTATCTCAGGACATA 33100
| || | || | ||| || ||| ||| | ||||| | | | |||||||
Sbjct 6194092 GTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATA 6194040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603133126097520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |