Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq107 125 9e-24
>seq107
Length=10122068
Score = 125 bits (138), Expect = 9e-24
Identities = 252/369 (68%), Gaps = 6/369 (2%)
Strand=Plus/Minus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
||||| ||| |||||||| |||||||| || || || || || || | ||||||||
Sbjct 4553281 CCCCTTAGCAAAGAAGAGGTGGAGTTTCCAATTGCATATTCTATAGTAGTTCACCACAAA 4553222
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
|| || ||| |||| | |||||||||||||||||| || ||||| |||| ||| |
Sbjct 4553221 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 4553162
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850
||||||||| || || | || || | | || || |||||| |||
Sbjct 4553161 CACGTGGACAAAAAATCTGAGGATTCCTTTTTAGATGCAGTGATGGGCATCGCGTCCTGC 4553102
Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910
||| |||||| | ||||| || |||| | ||||| || | || ||||| ||
Sbjct 4553101 TTCAGTAACGTCTTCGTGGCCAGCCAGCTGGAGCGTGTGGTCTATGCTTCATGGAGCCGT 4553042
Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTGGAGG 13967
|| ||||| ||||||| ||||||| |||||| || | | || || | |||| |
Sbjct 4553041 GTCCAGGCAGACCTCAACTGCATGAAGGACCTCTACAGAAT---GAGTGCAGACTGGAAG 4552985
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| || | || || || || ||||| || || | || ||||||||||| || || ||
Sbjct 4552984 TACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGG 4552925
Query 14028 GCGCTGAAG 14036
||| |||
Sbjct 4552924 CAGCTCAAG 4552916
Score = 102 bits (112), Expect = 1e-16
Identities = 188/272 (69%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336
||||| |||||||| || || | || ||||||||| | || || || | | | |||
Sbjct 4552678 GACACCTACAGCCCTGATGAATATCTCTGGGCCACCATTCAAAGGATCG-CTGAAGTCCC 4552620
Query 14337 GGGGGGATCCCCGTTCACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394
|| | || | | | || | || ||||||||| || |||||| ||| || || |
Sbjct 4552619 TGGCGCATTCTCCT-CAAGCCATAAGTACGACATGTCTGACATGCAGGCGGTGGCAAGAT 4552561
Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454
| ||||| ||| ||||||| || || ||| | || || |||| |||||||| |||
Sbjct 4552560 TTGTCAAATGGTACTACTATGAAGGCGATGTTTCCAAGGGCGCCCCCTACCCGCCCTGCA 4552501
Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514
|| ||||||| | | || ||||| | |||||| |||| ||| |||| ||| || |
Sbjct 4552500 GTGGTGTCCACGTGCGCTCCGTCTGCGTTTTCGGGGCCGGGGACTTGAACTGGATGCTGC 4552441
Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
| | ||| |||| ||||||||||| |||
Sbjct 4552440 ACAAGCACCACTTGTTTGCCAACAAGTTTGAC 4552409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658687134900480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |