Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq107 125 9e-24 >seq107 Length=10122068 Score = 125 bits (138), Expect = 9e-24 Identities = 252/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| |||||||| |||||||| || || || || || || | |||||||| Sbjct 4553281 CCCCTTAGCAAAGAAGAGGTGGAGTTTCCAATTGCATATTCTATAGTAGTTCACCACAAA 4553222 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || ||| |||| | |||||||||||||||||| || ||||| |||| ||| | Sbjct 4553221 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 4553162 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||||||| || || | || || | | || || |||||| ||| Sbjct 4553161 CACGTGGACAAAAAATCTGAGGATTCCTTTTTAGATGCAGTGATGGGCATCGCGTCCTGC 4553102 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||| |||||| | ||||| || |||| | ||||| || | || ||||| || Sbjct 4553101 TTCAGTAACGTCTTCGTGGCCAGCCAGCTGGAGCGTGTGGTCTATGCTTCATGGAGCCGT 4553042 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTGGAGG 13967 || ||||| ||||||| ||||||| |||||| || | | || || | |||| | Sbjct 4553041 GTCCAGGCAGACCTCAACTGCATGAAGGACCTCTACAGAAT---GAGTGCAGACTGGAAG 4552985 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || | || || || || ||||| || || | || ||||||||||| || || || Sbjct 4552984 TACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGG 4552925 Query 14028 GCGCTGAAG 14036 ||| ||| Sbjct 4552924 CAGCTCAAG 4552916 Score = 102 bits (112), Expect = 1e-16 Identities = 188/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| || || | || ||||||||| | || || || | | | ||| Sbjct 4552678 GACACCTACAGCCCTGATGAATATCTCTGGGCCACCATTCAAAGGATCG-CTGAAGTCCC 4552620 Query 14337 GGGGGGATCCCCGTTCACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 || | || | | | || | || ||||||||| || |||||| ||| || || | Sbjct 4552619 TGGCGCATTCTCCT-CAAGCCATAAGTACGACATGTCTGACATGCAGGCGGTGGCAAGAT 4552561 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||| ||| ||||||| || || ||| | || || |||| |||||||| ||| Sbjct 4552560 TTGTCAAATGGTACTACTATGAAGGCGATGTTTCCAAGGGCGCCCCCTACCCGCCCTGCA 4552501 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 || ||||||| | | || ||||| | |||||| |||| ||| |||| ||| || | Sbjct 4552500 GTGGTGTCCACGTGCGCTCCGTCTGCGTTTTCGGGGCCGGGGACTTGAACTGGATGCTGC 4552441 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | | ||| |||| ||||||||||| ||| Sbjct 4552440 ACAAGCACCACTTGTTTGCCAACAAGTTTGAC 4552409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658687134900480