Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq175 98.7 9e-16 seq40 89.7 4e-13 >seq175 Length=5584636 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || | || ||| | || |||||||| | ||||| || Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || |||||||| || | || |||||| Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || |||||| || ||||||| | | || | | || |||||| Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 1836479 ATTCAAAAGGAGTCTAC 1836495 >seq40 Length=19935044 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027 ||||||| || || | || |||| || || ||||| || || || || ||| | || | Sbjct 1219019 TTTTTAAATTTTAGGTCAGAATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCA 1219078 Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087 | || || |||||||| ||| | || |||| || || || || || || |||| Sbjct 1219079 CCCTGGAGGTGGAACCCAGTGACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAG 1219138 Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 ||||||| || || || || ||| | | || | || ||||| || ||||||| | Sbjct 1219139 AAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCC 1219198 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || |||| || |||||||| || |||||||||||| Sbjct 1219199 GCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACC 1219236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434884025136960