Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq175 98.7 9e-16
seq40 89.7 4e-13
>seq175
Length=5584636
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||||||||| || | || ||| | || |||||||| | ||||| ||
Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| || || || || |||||||| || | || ||||||
Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || |||||| || ||||||| | | || | | || ||||||
Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478
Query 27168 ATTCAAAAGGAGTCGAC 27184
|||||||||||||| ||
Sbjct 1836479 ATTCAAAAGGAGTCTAC 1836495
>seq40
Length=19935044
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 26971 TTTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027
||||||| || || | || |||| || || ||||| || || || || ||| | || |
Sbjct 1219019 TTTTTAAATTTTAGGTCAGAATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCA 1219078
Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087
| || || |||||||| ||| | || |||| || || || || || || ||||
Sbjct 1219079 CCCTGGAGGTGGAACCCAGTGACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAG 1219138
Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147
||||||| || || || || ||| | | || | || ||||| || ||||||| |
Sbjct 1219139 AAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCC 1219198
Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185
|| |||| || |||||||| || ||||||||||||
Sbjct 1219199 GCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACC 1219236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434884025136960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |