Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4 248 8e-61 seq16 217 1e-51 seq256 150 2e-31 >seq4 Length=36583390 Score = 248 bits (274), Expect = 8e-61 Identities = 502/734 (68%), Gaps = 11/734 (1%) Strand=Plus/Plus Query 34127 ATCCTCAGGGAGGGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTC 34186 |||||||| |||| | |||||| |||| | | || || || ||||| || |||| Sbjct 19717613 ATCCTCAGCTGGGGCATCAGGAAGGAGGACTGCATGGGCACCGGTACCCTGCCCATGTTT 19717672 Query 34187 GGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTG 34246 |||| ||||| | |||||||| | | || ||||| |||||||| || || |||||| Sbjct 19717673 GGCATGCAGGCACACTACAACCTGAGAGATGAGTTTCCTCTGCTGACAACCAAGCGTGTG 19717732 Query 34247 TACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAG 34306 | || | || || || || ||| |||||||| | | || |||| || | | Sbjct 19717733 TT-TGCACAGGTGTTGTGGAAGAGTTGCTGTGGCGTATCAAGGAT-CCACCAATGCTAGA 19717790 Query 34307 GAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGAC 34366 || || || ||| ||| |||||||||||||| || ||||| ||||||||| ||||| Sbjct 19717791 GAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAGTGGGTCCCGAGACTTTTTGGAC 19717850 Query 34367 AAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTG 34425 | | ||| ||| || || | || || || || | ||||| || || || || ||||| Sbjct 19717851 AGCCTGGGATTCTTCACCT-GAGAAGAAGGAGATTCAGGCCCAGTTTATGGCTTTCAGTG 19717909 Query 34426 GAGACACTTTGGGGCGGAGTATCGGGGGAGC-GAA-GCGGACTATTCGGGACAGGGAGCG 34483 ||| || |||| ||| || ||| || | ||| | || | || || |||| Sbjct 19717910 GAGGCATTTTGAGGCAGAATAT--AAAGATCTGAATTCAGATGGTGTAGGTCAAGGAGTA 19717967 Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 ||||||||||| | || | ||||| | || |||||||| ||||||| ||| | Sbjct 19717968 GACCAGCTGCAAAAGGTTACTGACACAATCAAAACCAACCCTGA-CACAGAAGAATCATC 19718026 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 |||||||| | ||| || | | || |||| || |||||| | || ||||| |||| Sbjct 19718027 ATGTGCGCTTAGAATCCACAAGGCCTTCCTCAGACGGCGCTAACTCCCTGCCATGCCCTT 19718086 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||||| |||| || | ||| | |||||| |||||||||| || || | || ||| || Sbjct 19718087 TGCCAGTTCTCTGTGGTGAACAGTGAGCTGACCTGCCAGCTGTAGCAGAGGTCAGGATAC 19718146 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 ||||| | ||||| || |||| |||||| || || || | | |||| |||| |||| Sbjct 19718147 ATGGGCCTGGGGGTACCTTTCACCATTGCCAGCTATGCCCAGTTCACCTACA--GTCGCA 19718204 Query 34724 CATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 || || | || || || | || | | |||| ||||| ||||| | ||| | | Sbjct 19718205 CACATCATAGGCCTGAAGCCACGTGACTTTGAATATACTTTGGGAGATGCACCTATTTTC 19718264 Query 34784 CTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | ||| |||| |||| || | ||||| || |||| || |||| |||||| || Sbjct 19718265 CAGAATCACACTGAGCCCCTGAAAGTTCAGCTCCAGAGAGAACCAAGACCTTTCCCCAAG 19718324 Query 34844 CTCAAAATTATTCG 34857 |||| ||| |||| Sbjct 19718325 CTCAGCATTCTTCG 19718338 Score = 248 bits (274), Expect = 8e-61 Identities = 502/734 (68%), Gaps = 11/734 (1%) Strand=Plus/Minus Query 6488 CGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGC 6547 |||| ||| |||||| |||||| |||| || |||| || ||||| | || || Sbjct 19718338 CGAAGAATGCTGAGCTTGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGC 19718279 Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 || |||| ||| || | ||| | ||||| ||||| |||| | | || | || | Sbjct 19718278 TCAGTGTGATTCTGGAAAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTC 19718219 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | || | || || |||| |||| |||| | | || || || |||||| |||| || Sbjct 19718218 AGGCCTATGATGTGTGCGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGT 19718161 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 ||||| | ||||||| ||| || | || || |||||||||| |||||| | ||| | Sbjct 19718160 ACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACC 19718101 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 || |||| ||||| |||| ||||| || | |||||| || |||| || | | || Sbjct 19718100 ACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGCGCCGTCTGAGGAAGGCCTTGTGGA 19718041 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||| | |||||||| | ||| ||||||| |||||||| || | ||||| | || Sbjct 19718040 TTCTAAGCGCACATGATGATTCTTCTGTG-TCAGGGTTGGTTTTGATTGTGTCAGTAACC 19717982 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTC-GCTCCCCCGATACTCCG 6905 | ||||||||||| |||| || || | || | ||| | || ||| || | Sbjct 19717981 TTTTGCAGCTGGTCTACTCCTTGACCTACACCATCTGAATTCAGATCTTT--ATATTCTG 19717924 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 || |||| || |||||||| || || || || ||||| | || || || || | || || Sbjct 19717923 CCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTC-AGGTG 19717865 Query 6966 G-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 ||| ||| | |||||| ||||||||| ||||| || |||||||||||||| ||| Sbjct 19717864 AAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCC 19717805 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 ||| || || || | | || |||| || | | |||||||| ||| || || Sbjct 19717804 TTGGAAGACAGTTCTCTAGCATTGGTGG-ATCCTTGATACGCCACAGCAACTCTTCCACA 19717746 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTAT 7144 || || | || ||||||| || || |||||||| ||||| || | | |||||||| Sbjct 19717745 ACACCTGTGCA-AACACACGCTTGGTTGTCAGCAGAGGAAACTCATCTCTCAGGTTGTAG 19717687 Query 7145 CGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAG 7204 | ||||| |||| |||| || ||||| || || || | | |||| |||||| | | Sbjct 19717686 TGTGCCTGCATGCCAAACATGGGCAGGGTACCGGTGCCCATGCAGTCCTCCTTCCTGATG 19717627 Query 7205 CCCTCCCTGAGGAT 7218 ||| |||||||| Sbjct 19717626 CCCCAGCTGAGGAT 19717613 >seq16 Length=28134011 Score = 217 bits (240), Expect = 1e-51 Identities = 384/555 (69%), Gaps = 10/555 (2%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 || || ||| |||||| |||||| |||| || ||||| ||||| | || | Sbjct 9569069 TCCAAGAATGCTGAGCTTGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGG 9569128 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| ||||| |||||||| ||||| ||||| ||||| |||||||| | || || || Sbjct 9569129 CTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTT 9569188 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || | || | || | | ||||| |||||||| | | || || |||||||| || Sbjct 9569189 CAGGCTCATTATGTGTTTGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGG 9569248 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 |||||| | ||||||||||| || || || ||||||||||||||||| | ||| Sbjct 9569249 CACCCC-AGGCCCATGTCTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGTTC-- 9569304 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 | |||| | ||||| ||| ||||| || || | | || ||||||| || || || || Sbjct 9569305 -ATGTAGGACTGGCAAAGGACTTGGCAAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGG 9569363 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| ||| | | ||| ||||| || |||||||| | || | ||| | || || Sbjct 9569364 ATTCCAATAACACGTGATGATTCTTCTATCCTCAGGGTTGCTTTTGATTGTGGCAATAAC 9569423 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | ||| ||||||| |||| || || ||||| | | | | | || || || Sbjct 9569424 TT--TGCTGCTGGTCTACTCCTTGGCCTGAATAATATGAATTCATATCTTTATGTTCTGC 9569481 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| ||||||||||| || || || || |||||||| || | || || || Sbjct 9569482 CCCAAAATGTCTCCACTGAAAGCCATAAACTGGGCCCAAATCTTCTTCTAGCCTGGA--- 9569538 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 ||| ||| | | |||| ||||||||| ||||| | | |||||||||||||| ||| Sbjct 9569539 GAATCCCAGGCTTTCCACAAAGTCTCGGGACCCATTGACATCCCAGATCTTCACTCCCTT 9569598 Query 7027 GGACGAGAGCTCCTT 7041 ||| || || || || Sbjct 9569599 GGAAGACAGTTCTTT 9569613 Score = 217 bits (240), Expect = 1e-51 Identities = 384/555 (69%), Gaps = 10/555 (2%) Strand=Plus/Minus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || || || || ||| ||| |||||||||||||| | | ||||| ||||||||| || Sbjct 9569613 AAAGAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGTCAATGGGTCCCGAGACTTTGTG 9569554 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 || | | ||| ||| || || || | || |||||||| || || || || ||| Sbjct 9569553 GAAAGCCTGGGATTC---TCCAGGCTAGAAGAAGATTTGGGCCCAGTTTATGGCTTTCAG 9569497 Query 34424 TGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCG 34483 |||||||| |||||||| || || | | | | | ||||| || || |||| Sbjct 9569496 TGGAGACATTTTGGGGCAGAACATAAAGATATGAATTCATATTATTCAGGCCAAGGAGTA 9569437 Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 ||||||| ||| | || || | ||| | || | |||||||| || ||||| ||| | Sbjct 9569436 GACCAGCAGCA--AAGTTATTGCCACAATCAAAAGCAACCCTGAGGATAGAAGAATCATC 9569379 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 | ||| ||||| || || || || ||||||| || | | || || ||||| ||| Sbjct 9569378 ACGTGTTATTGGAATCCAAAAGACCTTCCTCTGACGGTGATGCCTCCTTGCCAAGTCCTT 9569319 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||||| | |||| | ||| | ||||||||||||||||| || || || |||||| Sbjct 9569318 TGCCAGTCCTACAT---GAACAGTGAGCTGTCCTGCCAGCT-TACCAGAAGTCAGGAGAC 9569263 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 ||||| | |||||||| |||||||| || || | | |||||||| ||||| | | Sbjct 9569262 ATGGGCCT-GGGGTGCCTTTCAACATGGCCAGCTTCCACCTGCTCACCTACATAACCAAA 9569204 Query 34724 CATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 || | || | || || || || | |||||||| ||||| ||||| ||||| ||| Sbjct 9569203 CACATAATGAGCCTGAAGCCAGGTGACTTTGTGCATACTTTGGGAGATGCACATATTTAC 9569144 Query 34784 CTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 ||||| ||||| |||| || | ||||| ||||| || |||| |||||| || Sbjct 9569143 CTGAATCACATTGAGCCCCTGAAAGTTCAGCTCACTCGAGAACCAAGACCTTTCCCCAAG 9569084 Query 34844 CTCAAAATTATTCGA 34858 |||| ||| || || Sbjct 9569083 CTCAGCATTCTTGGA 9569069 >seq256 Length=2651488 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||| ||||||||| || || |||||| |||| ||||| ||||| || | |||| Sbjct 779280 GACCTTCCTCAGATGGCGCTGCCTCCCTGCCACGCCCTTTGCCAGTTCTATGTGGTGAAT 779339 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || || |||||||| | |||||||| ||| Sbjct 779340 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGCGACATGGGCCTGGGGGTGCCTTTC 779399 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| |||||||| || || Sbjct 779400 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCACA 779440 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| || || |||||||| |||||||| | ||| Sbjct 779440 TGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCC 779381 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || | || || ||||||||||||||||| |||||| | || ||||| ||| Sbjct 779380 ATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACATAGAACTGG 779321 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| || || ||||||||| |||| || || Sbjct 779320 CAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAAGGTC 779280 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||||||||||||| || | ||||||| Sbjct 775662 CCACCAATGCTAAAGAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAATGGGTCTC 775721 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||||| | || ||||| || || || ||||| || | Sbjct 775722 GAGACTTTTTGGACAGCCTGGGATTCCCCACCCGAGAGGAAGGAGATTTAGGCCCAGTTT 775781 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 | || || |||||||| || |||||||| || ||| Sbjct 775782 ATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATAT 775816 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || |||||||| || |||||||| || || || || ||||| || || || ||||| Sbjct 775816 ATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTTCCTC 775757 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||||| ||| | |||||| ||||||||||||||| | || ||||||||||| Sbjct 775756 TCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATCTT 775697 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || || || | || |||| Sbjct 775696 CACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGG 775662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448226970460560