Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq26 161 8e-35 seq63 118 9e-22 seq256 100 2e-16 seq16 87.8 1e-12 >seq26 Length=23966317 Score = 161 bits (178), Expect = 8e-35 Identities = 220/302 (73%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAG-TGTTTTT 1266 || || |||||||||||| || | | ||| | || || | ||| ||||| || | | Sbjct 22114677 GTGGTGACCCAGGATGAAA-AAGAGCGGTTGAACACACCTGCTTCC-TTAAGATGCTCTC 22114620 Query 1267 TAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAG 1326 | |||| || ||||| | ||||| |||||||| ||||| || || ||||||||| Sbjct 22114619 TGCAAACTGACCAGGAAGTCTTGATTGTGACATGGCAGAAAGTGAAGGCTACAAGCCCAG 22114560 Query 1327 AAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATA 1386 ||||||||| ||| || || || ||||||| ||||| |||||||| | || || || | Sbjct 22114559 AAAACATGGTCACCTTCAGCAAGAACCACGGAGTTGTGGTTCAGCCTACCTATAAGGACA 22114500 Query 1387 AAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACAT 1446 | ||||| || | | ||||| ||||||||| ||||||||||||| || || Sbjct 22114499 GGGTAAACATCACACATCCGGGACTCAGAAACACAACCTTAACCTTCTGGAATACCACCC 22114440 Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506 |||| ||||| ||||| || | ||| | || || | ||||| ||||||||||| |||| Sbjct 22114439 TGGAGGATGAGGGGTGTTATATGTGCCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAG 22114380 Query 1507 GA 1508 || Sbjct 22114379 GA 22114378 >seq63 Length=15279753 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||||| ||||| || ||||||||| Sbjct 13136196 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 13136137 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 13136136 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 13136077 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 13136076 ATCGCCCTCTGGATGACTGA 13136057 >seq256 Length=2651488 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596 || || | ||| ||||||||||| || | || ||||||||| | || ||||| || Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390 Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656 ||||| |||||||| |||| |||||||||| ||||| || ||||| || || | ||| Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330 Query 118657 TAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||| | | | ||| || |||||||| |||| Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292 >seq16 Length=28134011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 118453 GTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTA 118512 ||||| || | |||||| |||||||||||||||| || | ||| ||||| || | ||| Sbjct 9569109 GTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTA 9569168 Query 118513 TGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG 118572 || | || ||||| || | || | | | ||| | ||||| || | || | Sbjct 9569169 TGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGGTGAGCAGGTGG 9569228 Query 118573 TAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGG 118632 ||||||| | || ||||| || ||||| ||||||||| |||| ||||||| | ||| Sbjct 9569229 AAGCTGGCCATGTTGAAAGGCAC-CCCAGGCCCATGTCTCCTGACTTCTGGTA-AGCTGG 9569286 Query 118633 CAAGAGAGCTCCCCGTT 118649 || || ||||| | ||| Sbjct 9569287 CAGGACAGCTCACTGTT 9569303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414444859770172