Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq26 161 8e-35
seq63 118 9e-22
seq256 100 2e-16
seq16 87.8 1e-12
>seq26
Length=23966317
Score = 161 bits (178), Expect = 8e-35
Identities = 220/302 (73%), Gaps = 4/302 (1%)
Strand=Plus/Minus
Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAG-TGTTTTT 1266
|| || |||||||||||| || | | ||| | || || | ||| ||||| || | |
Sbjct 22114677 GTGGTGACCCAGGATGAAA-AAGAGCGGTTGAACACACCTGCTTCC-TTAAGATGCTCTC 22114620
Query 1267 TAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAG 1326
| |||| || ||||| | ||||| |||||||| ||||| || || |||||||||
Sbjct 22114619 TGCAAACTGACCAGGAAGTCTTGATTGTGACATGGCAGAAAGTGAAGGCTACAAGCCCAG 22114560
Query 1327 AAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATA 1386
||||||||| ||| || || || ||||||| ||||| |||||||| | || || || |
Sbjct 22114559 AAAACATGGTCACCTTCAGCAAGAACCACGGAGTTGTGGTTCAGCCTACCTATAAGGACA 22114500
Query 1387 AAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACAT 1446
| ||||| || | | ||||| ||||||||| ||||||||||||| || ||
Sbjct 22114499 GGGTAAACATCACACATCCGGGACTCAGAAACACAACCTTAACCTTCTGGAATACCACCC 22114440
Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506
|||| ||||| ||||| || | ||| | || || | ||||| ||||||||||| ||||
Sbjct 22114439 TGGAGGATGAGGGGTGTTATATGTGCCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAG 22114380
Query 1507 GA 1508
||
Sbjct 22114379 GA 22114378
>seq63
Length=15279753
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || ||||| ||||||||||| ||||| || |||||||||
Sbjct 13136196 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 13136137
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 13136136 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 13136077
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| |||||||| ||
Sbjct 13136076 ATCGCCCTCTGGATGACTGA 13136057
>seq256
Length=2651488
Score = 100 bits (110), Expect = 2e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596
|| || | ||| ||||||||||| || | || ||||||||| | || ||||| ||
Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390
Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656
||||| |||||||| |||| |||||||||| ||||| || ||||| || || | |||
Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330
Query 118657 TAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
|| ||||| | | | ||| || |||||||| ||||
Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292
>seq16
Length=28134011
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 118453 GTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTA 118512
||||| || | |||||| |||||||||||||||| || | ||| ||||| || | |||
Sbjct 9569109 GTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTA 9569168
Query 118513 TGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG 118572
|| | || ||||| || | || | | | ||| | ||||| || | || |
Sbjct 9569169 TGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGGTGAGCAGGTGG 9569228
Query 118573 TAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGG 118632
||||||| | || ||||| || ||||| ||||||||| |||| ||||||| | |||
Sbjct 9569229 AAGCTGGCCATGTTGAAAGGCAC-CCCAGGCCCATGTCTCCTGACTTCTGGTA-AGCTGG 9569286
Query 118633 CAAGAGAGCTCCCCGTT 118649
|| || ||||| | |||
Sbjct 9569287 CAGGACAGCTCACTGTT 9569303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414444859770172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |