Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq40 170 4e-37
seq131 168 2e-36
seq175 154 3e-32
seq113 134 3e-26
seq47 127 5e-24
seq209 123 6e-23
seq24 120 7e-22
seq59 93.3 1e-13
seq122 84.2 5e-11
>seq40
Length=19935044
Score = 170 bits (188), Expect = 4e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || ||||| || |||||||| || || | ||| || | |||||||||||||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|||||||| ||||| || | || ||||||||||| | ||||| || |||||||||||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| ||||| |||||||||||| | ||| ||||| || ||||| |||||||||||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|| |||||||| || | ||||||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATT 1219038
Score = 141 bits (156), Expect = 2e-28
Identities = 123/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || ||||| |||||||| ||||| || || || | ||| || | ||||||
Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || ||||||||||| | ||||| || |||
Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| |||||||| |||||||| |||
Sbjct 1219562 TGGATCTTGGCCTTCACGTTCTCGATGGTATCA 1219530
>seq131
Length=8015323
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || ||||||||||| |||||||| || || | ||||| | |||||||
Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| | | || ||||||||||||| |||||||||||
Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || || || || ||||||||| | || || || || ||||| |||
Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 2518609
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || | ||||| || || | |||||||
Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028
|| || || || ||||| | | || ||||||||||| | ||||||||||| ||||||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088
||| || ||||| || ||||||||| | || ||||| || ||||| || || |||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115
|| | || || ||||| | |||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq175
Length=5584636
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| ||||| |||||||| ||||| ||||| ||||| || || | ||
Sbjct 1836520 ACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGT 1836461
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|||||||||||| | ||||| || ||||| || | ||||| ||||||| || |||
Sbjct 1836460 AGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCC 1836401
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| || ||||||||||| ||| || ||||| || || || ||| |||| |||| ||
Sbjct 1836400 TTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAG 1836341
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct 1836340 AGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296
>seq113
Length=9683949
Score = 134 bits (148), Expect = 3e-26
Identities = 166/225 (74%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|| |||||| | ||||| |||||||| ||||| || | ||||| || || | | |||
Sbjct 8523887 ACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGT 8523945
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||| || | | | || ||||| || | || ||| |||||||| |||
Sbjct 8523946 ACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCC 8524003
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||||||||| || || ||| | || || || || |||||||| |||
Sbjct 8524004 TTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAAGTGTTCAACCTTGAG 8524063
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|||||| ||||| || | || || |||| || | |||||||||
Sbjct 8524064 AGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108
>seq47
Length=17992032
Score = 127 bits (140), Expect = 5e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
||||| | ||||| || |||| |||| ||||| ||||| || || | | | | |
Sbjct 7327100 AGTCTCAACACAAGACAAAAAGTGTACTCCTTTTGAATGTTGTAGTCAGACAAGTTATGT 7327041
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||||| ||| ||| |||| || ||||| || | || || |||||||||| || ||||
Sbjct 7327040 CCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTCC 7326981
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|| ||||||||||| ||| |||||||| || || || || ||| ||| || ||||
Sbjct 7326980 TTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGTG 7326921
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTA 211101
|| ||||| || || ||||| ||||
Sbjct 7326920 ATGGTCTTCCCTGTTAGAGTTTTTA 7326896
>seq209
Length=4208363
Score = 123 bits (136), Expect = 6e-23
Identities = 158/215 (73%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||| |||| ||||| |||||| ||||||| || || | ||| | | ||||||
Sbjct 4009455 AGGACACGGTGCAGAGTTGACTCT----GGATGTTGTAGTCAGAAAGTG--CGACCATCT 4009508
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||||||||| ||||| || | || ||||||||||| | ||||| || |||
Sbjct 4009509 TC-AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 4009567
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||| ||| || | ||| || |||||||| | ||| ||||| || ||||| |||
Sbjct 4009568 TGGAGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTC 4009627
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || |||||| || | ||||||||
Sbjct 4009628 TTGCCAGTCAGGATCTTTATGAAGATTTGCATTTT 4009662
>seq24
Length=24352400
Score = 120 bits (132), Expect = 7e-22
Identities = 136/181 (75%), Gaps = 1/181 (1%)
Strand=Plus/Plus
Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979
||||| || ||||||||||| || | || || | ||||| |||||||| ||||||||
Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039
Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAG-GAACTCCTTCCTTGTCCTGGATCTTTTGTTTCA 211038
| || || | || |||||||| | | | || |||||||||||||| || ||| |
Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099
Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098
|||| |||||||||||| | |||||||||| ||||| ||||| ||| | || ||||
Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159
Query 211099 T 211099
|
Sbjct 13199160 T 13199160
>seq59
Length=15706754
Score = 93.3 bits (102), Expect = 1e-13
Identities = 148/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964
|| ||||| | ||||||||||| || ||||| || || | || || || || ||
Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAGAGAGTGTGATT--GTCCTC 4366216
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
||||| ||||||| | | || || || ||||| || | | || |||||||| ||
Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||| || ||| ||||| | |||| ||||| | || | ||| |||||||| |||||
Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| |||| ||||| | ||||||
Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366
>seq122
Length=8875436
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|| |||||||| ||||| || ||| || || |||||||||||| | || ||||||
Sbjct 4650663 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 4650722
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| ||||| || || || ||||| ||||| | ||||||
Sbjct 4650723 AGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4650766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159058093111895
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