Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq40 170 4e-37 seq131 168 2e-36 seq175 154 3e-32 seq113 134 3e-26 seq47 127 5e-24 seq209 123 6e-23 seq24 120 7e-22 seq59 93.3 1e-13 seq122 84.2 5e-11 >seq40 Length=19935044 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || |||||||| || || | ||| || | ||||||||||||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 |||||||| ||||| || | || ||||||||||| | ||||| || ||||||||||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| |||||||||||| | ||| ||||| || ||||| ||||||||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || |||||||| || | |||||| Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATT 1219038 Score = 141 bits (156), Expect = 2e-28 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| ||||| || || || | ||| || | |||||| Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| |||||||| |||||||| ||| Sbjct 1219562 TGGATCTTGGCCTTCACGTTCTCGATGGTATCA 1219530 >seq131 Length=8015323 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | ||||| | ||||||| Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||||||||||| ||||||||||| Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || ||||||||| | || || || || ||||| ||| Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 2518609 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| || || | ||||||| Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 || || || || ||||| | | || ||||||||||| | ||||||||||| |||||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||| || ||||| || ||||||||| | || ||||| || ||||| || || ||| Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 || | || || ||||| | ||||||| Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq175 Length=5584636 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| ||||| |||||||| ||||| ||||| ||||| || || | || Sbjct 1836520 ACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGT 1836461 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| | ||||| || ||||| || | ||||| ||||||| || ||| Sbjct 1836460 AGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCC 1836401 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||||||||| ||| || ||||| || || || ||| |||| |||| || Sbjct 1836400 TTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAG 1836341 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| ||||| ||| | || || |||||||| | ||||| || Sbjct 1836340 AGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296 >seq113 Length=9683949 Score = 134 bits (148), Expect = 3e-26 Identities = 166/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | ||||| |||||||| ||||| || | ||||| || || | | ||| Sbjct 8523887 ACAAAGTCTCAACACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGT 8523945 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || | | | || ||||| || | || ||| |||||||| ||| Sbjct 8523946 ACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCC 8524003 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||| | || || || || |||||||| ||| Sbjct 8524004 TTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCAAGTGTTCAACCTTGAG 8524063 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| ||||| || | || || |||| || | ||||||||| Sbjct 8524064 AGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTGCATTTT 8524108 >seq47 Length=17992032 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||||| || |||| |||| ||||| ||||| || || | | | | | Sbjct 7327100 AGTCTCAACACAAGACAAAAAGTGTACTCCTTTTGAATGTTGTAGTCAGACAAGTTATGT 7327041 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||||| ||| ||| |||| || ||||| || | || || |||||||||| || |||| Sbjct 7327040 CCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTCC 7326981 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||||||||| ||| |||||||| || || || || ||| ||| || |||| Sbjct 7326980 TTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGTG 7326921 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTA 211101 || ||||| || || ||||| |||| Sbjct 7326920 ATGGTCTTCCCTGTTAGAGTTTTTA 7326896 >seq209 Length=4208363 Score = 123 bits (136), Expect = 6e-23 Identities = 158/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||| |||| ||||| |||||| ||||||| || || | ||| | | |||||| Sbjct 4009455 AGGACACGGTGCAGAGTTGACTCT----GGATGTTGTAGTCAGAAAGTG--CGACCATCT 4009508 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 4009509 TC-AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 4009567 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||| ||| || | ||| || |||||||| | ||| ||||| || ||||| ||| Sbjct 4009568 TGGAGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTC 4009627 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || |||||| || | |||||||| Sbjct 4009628 TTGCCAGTCAGGATCTTTATGAAGATTTGCATTTT 4009662 >seq24 Length=24352400 Score = 120 bits (132), Expect = 7e-22 Identities = 136/181 (75%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 ||||| || ||||||||||| || | || || | ||||| |||||||| |||||||| Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAG-GAACTCCTTCCTTGTCCTGGATCTTTTGTTTCA 211038 | || || | || |||||||| | | | || |||||||||||||| || ||| | Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099 Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 |||| |||||||||||| | |||||||||| ||||| ||||| ||| | || |||| Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159 Query 211099 T 211099 | Sbjct 13199160 T 13199160 >seq59 Length=15706754 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 || ||||| | ||||||||||| || ||||| || || | || || || || || Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAGAGAGTGTGATT--GTCCTC 4366216 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||| ||||||| | | || || || ||||| || | | || |||||||| || Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || ||| ||||| | |||| ||||| | || | ||| |||||||| ||||| Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||| ||||| | |||||| Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366 >seq122 Length=8875436 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| ||||| || ||| || || |||||||||||| | || |||||| Sbjct 4650663 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 4650722 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || || ||||| ||||| | |||||| Sbjct 4650723 AGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4650766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159058093111895