Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq131 100 2e-16 >seq131 Length=8015323 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||| | || || || || ||||| || ||||| || ||| Sbjct 2518642 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 2518583 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | ||||| ||||| | || || || | Sbjct 2518582 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATTCCTCCTGACC 2518524 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| ||||| || |||||||| | ||| || | || |||| Sbjct 2518523 AGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACA 2518464 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 2518463 ACATCCAGAAAGAGTCCAC 2518445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983552452084