Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq131 143 6e-29
seq40 111 4e-19
seq78 100 7e-16
seq48 89.7 1e-12
seq47 87.8 4e-12
>seq131
Length=8015323
Score = 143 bits (158), Expect = 6e-29
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| ||||| |||| ||||| || | || || | |||||
Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| | | || ||||| || ||||| |||||||||||
Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||||| ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 2518549 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 2518608
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| || ||||| || || | ||| | ||||||
Sbjct 2518609 CTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
|| |||||||| ||||| | | || ||||| || || || ||||||||||||||||||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687
||| ||| || || |||||||| || ||||| || | ||||| || || |||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| | || | ||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq40
Length=19935044
Score = 111 bits (122), Expect = 4e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || || || || |||| ||||| || | | ||| | |||||||| ||||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || ||||| || | || ||||| || || || ||||| || || ||||||||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| || ||||||||||| || |||||| || | ||||| ||||| |||||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 225691 AAAGTTTTTATGAACACTTGCATT 225714
| || |||| ||| | |||||||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATT 1219038
>seq78
Length=13140922
Score = 100 bits (110), Expect = 7e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|||| || ||||||||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 1298003 AATACCTGTCCATCAGTAATGGAAATGACATTCGTTGGAATATAAGCAGACACATCACCA 1297944
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
||||||||||| | || ||||| || || | || ||||||||||||
Sbjct 1297943 GCTTGTGTTTCTATGACTGGTAAAGCCGTCAAGGAGCCACCACCAAAA 1297896
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || || | || ||| ||| |||||||||||||| |||||||
Sbjct 1297574 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 1297633
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122
| || |||||||| |||||||| || || ||| ||||| ||||
Sbjct 1297634 GCAAGCATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 1297679
>seq48
Length=17931790
Score = 89.7 bits (98), Expect = 1e-12
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 225557 CATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCT 225616
||||||| | ||||| ||||| ||||| |||| ||| || || || |||| |||||||
Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799
Query 225617 TGTCTTGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
| ||||||||| || |||| || ||| || || || |||| ||| || || | ||
Sbjct 9683800 TATCTTGGATC-TTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTT 9683858
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
| |||| | |||| || ||||||||| | ||||||||
Sbjct 9683859 ACAATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTT 9683899
>seq47
Length=17992032
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||||| ||||| | |||| | || ||||| | ||||| || | ||| ||| |
Sbjct 7327100 AGTCTCAACACAAGACAAAAAGTGTACTCCTTTTGAATGTTGTAGTCAGACAA-GTTATG 7327042
Query 225556 -CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||||| || ||| | ||||| ||||| |||| || || || || ||||| | |||
Sbjct 7327041 TCCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTC 7326982
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||| || |||||||| || || ||| || || ||| ||| || | | | ||
Sbjct 7326981 CTTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGT 7326922
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
||| ||||| || || | ||||||||||||
Sbjct 7326921 GATGGTCTTCCCTGTTAGAGTTTTTATGAA 7326892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192434588948162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |