Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq131 143 6e-29 seq40 111 4e-19 seq78 100 7e-16 seq48 89.7 1e-12 seq47 87.8 4e-12 >seq131 Length=8015323 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| || | || || | ||||| Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | | || ||||| || ||||| ||||||||||| Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 2518549 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 2518608 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||||| || || | ||| | |||||| Sbjct 2518609 CTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 || |||||||| ||||| | | || ||||| || || || |||||||||||||||||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 ||| ||| || || |||||||| || ||||| || | ||||| || || ||| Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| | || | |||||| Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq40 Length=19935044 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| ||||| || | | ||| | |||||||| |||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || | || ||||| || || || ||||| || || |||||||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||||||||||| || |||||| || | ||||| ||||| ||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | || |||| ||| | ||||||| Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATT 1219038 >seq78 Length=13140922 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || ||||||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 1298003 AATACCTGTCCATCAGTAATGGAAATGACATTCGTTGGAATATAAGCAGACACATCACCA 1297944 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| || || | || |||||||||||| Sbjct 1297943 GCTTGTGTTTCTATGACTGGTAAAGCCGTCAAGGAGCCACCACCAAAA 1297896 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 1297574 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 1297633 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | || |||||||| |||||||| || || ||| ||||| |||| Sbjct 1297634 GCAAGCATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 1297679 >seq48 Length=17931790 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 225557 CATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCT 225616 ||||||| | ||||| ||||| ||||| |||| ||| || || || |||| ||||||| Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799 Query 225617 TGTCTTGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 | ||||||||| || |||| || ||| || || || |||| ||| || || | || Sbjct 9683800 TATCTTGGATC-TTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTT 9683858 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | |||| | |||| || ||||||||| | |||||||| Sbjct 9683859 ACAATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTT 9683899 >seq47 Length=17992032 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||||| | |||| | || ||||| | ||||| || | ||| ||| | Sbjct 7327100 AGTCTCAACACAAGACAAAAAGTGTACTCCTTTTGAATGTTGTAGTCAGACAA-GTTATG 7327042 Query 225556 -CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||||| || ||| | ||||| ||||| |||| || || || || ||||| | ||| Sbjct 7327041 TCCATCTTTCAGTTGCCTGCCAGCAAAGATCAGTCTGTGCTGATCAGGAGGAATTCTTTC 7326982 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| || |||||||| || || ||| || || ||| ||| || | | | || Sbjct 7326981 CTTTTCCTGGATCTTGGCTTTTACGTTTTCTATTGTATCTAAGGGCTCAGCCTTGACAGT 7326922 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||| ||||| || || | |||||||||||| Sbjct 7326921 GATGGTCTTCCCTGTTAGAGTTTTTATGAA 7326892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192434588948162