Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4 152 4e-32 seq256 150 1e-31 seq29 96.9 3e-15 >seq4 Length=36583390 Score = 152 bits (168), Expect = 4e-32 Identities = 409/628 (65%), Gaps = 13/628 (2%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||| || ||||| || || |||| |||||||| |||| || || ||| | || Sbjct 19718322 TGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGA 19718263 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | | |||||||||| || | |||| || | || | || || ||| ||| | Sbjct 19718262 AAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTG 19718203 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | | |||| |||| | | |||||||| ||| | || || ||||| || ||||||| Sbjct 19718202 CGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGT 19718145 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 ||||||||||| || |||||||| | ||||| | || ||| | ||||| || | Sbjct 19718144 ATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAA 19718085 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||||||||| |||| || ||| | || | | ||| || ||| | || |||| || Sbjct 19718084 GGGCATGGCAGGGAGTTAGCGCCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGA 19718025 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | |||| || |||||| | |||| ||| | ||||||||||| || | Sbjct 19718024 TGATTCTTCTGT-GTCAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTA 19717966 Query 29970 CCCC----CATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTC 30025 | || | | | | | |||| | ||||||||| Sbjct 19717965 CTCCTTGACCTACACCA----TCTGAATTCAGATCTTTATATTCTGCCTCAAAATGCCTC 19717910 Query 30026 CACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 30085 ||||| || || || || || || ||||| ||||| | | ||| ||| || Sbjct 19717909 CACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGGCTG 19717850 Query 30086 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 30145 ||||||||||||| ||| || |||| ||||||||||| || ||||| || || ||| Sbjct 19717849 TCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCT 19717790 Query 30146 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30205 | | || ||||| ||| ||| |||||||| ||| ||||| || ||| ||| Sbjct 19717789 CTAGCATTGGTGGATCCT-TGATACGCCACAGCAACTCTTCCACAAC-ACCTGTGCAAAC 19717732 Query 30206 ACCCTCTTGGTCGTGAGGAGGGGAAACT 30233 || | |||||| || || || ||||||| Sbjct 19717731 ACACGCTTGGTTGTCAGCAGAGGAAACT 19717704 >seq256 Length=2651488 Score = 150 bits (166), Expect = 1e-31 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 ||||||| ||| || |||||||| ||||| || | ||||||||||||||| || |||||| Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || |||||||| |||||||||||||| |||||||| || ||||| || | ||| Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330 Query 29837 TAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || ||||| || | ||| ||||| ||||| || ||||| Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292 >seq29 Length=23005217 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | || ||| ||| |||||||||||| || || Sbjct 2169105 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGA 2169046 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 2169045 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2168998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406131900429178