Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq87 246 3e-60 seq23 113 4e-20 seq48 102 7e-17 seq110 95.1 1e-14 seq7 95.1 1e-14 seq9 89.7 4e-13 >seq87 Length=11743621 Score = 246 bits (272), Expect = 3e-60 Identities = 567/844 (67%), Gaps = 14/844 (2%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| |||||||| |||||| | ||||| |||||||| |||||||| ||||| Sbjct 8842169 TACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAA 8842228 Query 4331 CGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTA 4389 ||||| | | || | | || || | || || | | | | || || |||| Sbjct 8842229 TGGATTTTCTACTCTGAATACCTTGTTAAAACCC-AGTTCCAGCATTAGTCTCTCTGCTA 8842287 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 ||| | || ||||| |||| | ||| || |||| || | ||||| | | | Sbjct 8842288 CAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGG 8842346 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | || | | ||| | |||||| | || || | | ||||| ||||||| | | | Sbjct 8842347 CCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCT 8842406 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 | | ||||| | || |||| | ||| || || | ||| ||||| || |||| Sbjct 8842407 GCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAAC 8842466 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 || ||||||||||| | ||| || ||| | || | || |||||||| |||| || | Sbjct 8842467 TCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCT 8842526 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | || || ||||| | ||||| || ||||||||||| || ||||||| | |||||| | Sbjct 8842527 TGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGG 8842586 Query 4690 CTAC-TAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 |||| | | ||| | |||| |||| || ||||| | || ||||| | Sbjct 8842587 CTACATCACACTTACCATAGGTAGCTT-CTTTTTCCCCGATCCAATGCAAGGCCCAATCT 8842645 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCA 4805 || || ||||| || || || ||||| | || || || || | | | |||| | Sbjct 8842646 GCCTTCTTCTTTACACAAGGCATTGTTCA-ATGGCATTGAAGAGAAACTCCCTTTCCT-- 8842702 Query 4806 AATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864 ||| |||| ||| |||||||| | || || | ||||||||||||||||| ||||| Sbjct 8842703 --TGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760 Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || ||||| || || || || | || | |||||||| | ||||||| | | ||| Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 || | | |||||||| || | ||| || || || |||||||| || |||| |||||| Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| |||| || ||| | |||||| || || |||||| | | || || | | Sbjct 8842881 TGATGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAG 8842940 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||| | || ||| |||||||||| || | || ||||| || ||||| ||||||||| Sbjct 8842941 ATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATC 8843000 Query 5105 AGGA 5108 | || Sbjct 8843001 ATGA 8843004 >seq23 Length=24341844 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || |||||||| |||| || || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||||||||| ||||| ||| Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 4692 AC 4693 || Sbjct 8996165 AC 8996166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 8998516 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 8998575 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 8998576 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 8998630 >seq48 Length=17931790 Score = 102 bits (112), Expect = 7e-17 Identities = 206/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||| || ||||| || | | ||||| ||||| || ||| || ||||| Sbjct 14690840 CTCGTGAAAATGGACATTCAGATGGCCCTTCCTTCTGGGTGTTATGGAAGAGAGGCTCCA 14690899 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | ||||| ||||| || |||||||| || || || || | ||||| |||||| ||| Sbjct 14690900 CGTTCTGGTTTGGCTGTAAAACACTTCATAGATGTAGGAGATGGTGTCATAGATGAAGAT 14690959 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945 |||| || ||| |||| |||| ||||||||||||| |||||| | | || | Sbjct 14690960 TATACAGCAAATGTTGCTGCTGTGCTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TC 14691016 Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAA 32005 |||||||| ||| | | || || || ||||| ||| ||| || ||||||| Sbjct 14691017 AAAAAGGGTGATCGAATTGCACAGCTTATTTGTGAACGAATTTTTTATCCAGAAATAGAG 14691076 Query 32006 GTAG-CTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064 | || | || | | ||||| ||| ||||| || | ||| ||||| || || ||||| Sbjct 14691077 GAAGTCCAAGT-TTTAGATGACACCAAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA 14691135 >seq110 Length=9993444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 34306 AAAAACATACAAATGGTTCAGTATATTTATAAAAACACATCTTCTTACGGAGATCCTCTA 34365 ||||||| |||||||||||| |||||||| ||| ||||| || | | | ||| || Sbjct 7489789 AAAAACAAACAAATGGTTCAATATATTTACAAATACACAAGTTATCCTG---ACCCTATA 7489733 Query 34366 ATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCTGAGTACGGTCTTTAC 34425 | |||||||||||||||||| || |||||| |||| | || || || || || Sbjct 7489732 CTACTGATGAAAAGCGCTAGAAATAGTTGCTGGTCTAAAGATTCAGAATATGGACTCTAT 7489673 Query 34426 TCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGTGTGTTTGTAACAGTT 34485 || | |||||||| |||||| | || ||| || || || | ||||| | || Sbjct 7489672 TCCATCTATCAAGGGGGAATATTTGAGCTTAAAGAAAATGACAGGATTTTTGTCTCTGTA 7489613 Query 34486 ACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTTTGGAGCGTTTTTAAT 34544 ||||| || | || | | |||||| | ||||| | | |||||| || |||||||| Sbjct 7489612 ACTAATGAACAATTGATTGACATGGACCA-AGAAGCCAGTTTTTTTGGGGCCTTTTTAAT 7489554 >seq7 Length=35051756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| | ||||| || | | ||||| ||| | || |||||| |||| Sbjct 5123300 AGCCCTTGTGAAAAGGAACATTCAGATAGCCCTTCCTTCTGGGCGTTATGGACGAGTAGC 5123241 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| |||| ||||| ||||| || || | || || || ||||| |||||| Sbjct 5123240 TCCACATTCTGACTTGGCTACAAAACATTTCATACATGTAGGAGCTGGTGTCATAGATAA 5123181 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||| |||||||||| |||| ||||| ||||||||||||| |||||| Sbjct 5123180 AGACTGTAGAGGAAACTTTGGTGTTGTGCTGTTTAATTTTGGCAAAGAAAA 5123130 >seq9 Length=34412642 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||||||||| || || | Sbjct 15797787 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 15797731 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | || || ||||| |||| || || | |||| || ||||| || || | ||| || | Sbjct 15797730 CGTGGGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTTG 15797671 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 15797670 ATAAGTCAAC 15797661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| ||||| |||||||| ||||| |||||||| ||||| |||||| Sbjct 15817932 TGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 15817873 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 15817872 ATAAAATCAAAGGGATT 15817856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427016690890559