Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq87 246 3e-60
seq23 113 4e-20
seq48 102 7e-17
seq110 95.1 1e-14
seq7 95.1 1e-14
seq9 89.7 4e-13
>seq87
Length=11743621
Score = 246 bits (272), Expect = 3e-60
Identities = 567/844 (67%), Gaps = 14/844 (2%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| ||| |||||||| |||||| | ||||| |||||||| |||||||| |||||
Sbjct 8842169 TACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAA 8842228
Query 4331 CGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTA 4389
||||| | | || | | || || | || || | | | | || || ||||
Sbjct 8842229 TGGATTTTCTACTCTGAATACCTTGTTAAAACCC-AGTTCCAGCATTAGTCTCTCTGCTA 8842287
Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449
||| | || ||||| |||| | ||| || |||| || | ||||| | | |
Sbjct 8842288 CAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGG 8842346
Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509
| | || | | ||| | |||||| | || || | | ||||| ||||||| | | |
Sbjct 8842347 CCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCT 8842406
Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569
| | ||||| | || |||| | ||| || || | ||| ||||| || ||||
Sbjct 8842407 GCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAAC 8842466
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|| ||||||||||| | ||| || ||| | || | || |||||||| |||| || |
Sbjct 8842467 TCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCT 8842526
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| || || ||||| | ||||| || ||||||||||| || ||||||| | |||||| |
Sbjct 8842527 TGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGG 8842586
Query 4690 CTAC-TAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748
|||| | | ||| | |||| |||| || ||||| | || ||||| |
Sbjct 8842587 CTACATCACACTTACCATAGGTAGCTT-CTTTTTCCCCGATCCAATGCAAGGCCCAATCT 8842645
Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCA 4805
|| || ||||| || || || ||||| | || || || || | | | |||| |
Sbjct 8842646 GCCTTCTTCTTTACACAAGGCATTGTTCA-ATGGCATTGAAGAGAAACTCCCTTTCCT-- 8842702
Query 4806 AATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864
||| |||| ||| |||||||| | || || | ||||||||||||||||| |||||
Sbjct 8842703 --TGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760
Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924
|| ||||| || || || || | || | |||||||| | ||||||| | | |||
Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820
Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984
|| | | |||||||| || | ||| || || || |||||||| || |||| ||||||
Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880
Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044
||| |||| || ||| | |||||| || || |||||| | | || || | |
Sbjct 8842881 TGATGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAG 8842940
Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104
||| | || ||| |||||||||| || | || ||||| || ||||| |||||||||
Sbjct 8842941 ATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATC 8843000
Query 5105 AGGA 5108
| ||
Sbjct 8843001 ATGA 8843004
>seq23
Length=24341844
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || |||||||| |||| || ||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||||||||| ||||| |||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164
Query 4692 AC 4693
||
Sbjct 8996165 AC 8996166
Score = 95.1 bits (104), Expect = 1e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 8998516 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 8998575
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
|| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 8998576 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 8998630
>seq48
Length=17931790
Score = 102 bits (112), Expect = 7e-17
Identities = 206/300 (69%), Gaps = 8/300 (3%)
Strand=Plus/Plus
Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828
|| || |||| || ||||| || | | ||||| ||||| || ||| || |||||
Sbjct 14690840 CTCGTGAAAATGGACATTCAGATGGCCCTTCCTTCTGGGTGTTATGGAAGAGAGGCTCCA 14690899
Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888
| ||||| ||||| || |||||||| || || || || | ||||| |||||| |||
Sbjct 14690900 CGTTCTGGTTTGGCTGTAAAACACTTCATAGATGTAGGAGATGGTGTCATAGATGAAGAT 14690959
Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945
|||| || ||| |||| |||| ||||||||||||| |||||| | | || |
Sbjct 14690960 TATACAGCAAATGTTGCTGCTGTGCTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TC 14691016
Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAA 32005
|||||||| ||| | | || || || ||||| ||| ||| || |||||||
Sbjct 14691017 AAAAAGGGTGATCGAATTGCACAGCTTATTTGTGAACGAATTTTTTATCCAGAAATAGAG 14691076
Query 32006 GTAG-CTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064
| || | || | | ||||| ||| ||||| || | ||| ||||| || || |||||
Sbjct 14691077 GAAGTCCAAGT-TTTAGATGACACCAAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA 14691135
>seq110
Length=9993444
Score = 95.1 bits (104), Expect = 1e-14
Identities = 167/240 (70%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 34306 AAAAACATACAAATGGTTCAGTATATTTATAAAAACACATCTTCTTACGGAGATCCTCTA 34365
||||||| |||||||||||| |||||||| ||| ||||| || | | | ||| ||
Sbjct 7489789 AAAAACAAACAAATGGTTCAATATATTTACAAATACACAAGTTATCCTG---ACCCTATA 7489733
Query 34366 ATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCTGAGTACGGTCTTTAC 34425
| |||||||||||||||||| || |||||| |||| | || || || || ||
Sbjct 7489732 CTACTGATGAAAAGCGCTAGAAATAGTTGCTGGTCTAAAGATTCAGAATATGGACTCTAT 7489673
Query 34426 TCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGTGTGTTTGTAACAGTT 34485
|| | |||||||| |||||| | || ||| || || || | ||||| | ||
Sbjct 7489672 TCCATCTATCAAGGGGGAATATTTGAGCTTAAAGAAAATGACAGGATTTTTGTCTCTGTA 7489613
Query 34486 ACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTTTGGAGCGTTTTTAAT 34544
||||| || | || | | |||||| | ||||| | | |||||| || ||||||||
Sbjct 7489612 ACTAATGAACAATTGATTGACATGGACCA-AGAAGCCAGTTTTTTTGGGGCCTTTTTAAT 7489554
>seq7
Length=35051756
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/171 (73%), Gaps = 3/171 (2%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || |||| | ||||| || | | ||||| ||| | || |||||| ||||
Sbjct 5123300 AGCCCTTGTGAAAAGGAACATTCAGATAGCCCTTCCTTCTGGGCGTTATGGACGAGTAGC 5123241
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| |||| ||||| ||||| || || | || || || ||||| ||||||
Sbjct 5123240 TCCACATTCTGACTTGGCTACAAAACATTTCATACATGTAGGAGCTGGTGTCATAGATAA 5123181
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
||||| |||||||||| |||| ||||| ||||||||||||| ||||||
Sbjct 5123180 AGACTGTAGAGGAAACTTTGGTGTTGTGCTGTTTAATTTTGGCAAAGAAAA 5123130
>seq9
Length=34412642
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || |||||||| ||||| || || ||||||||||||||||| || || |
Sbjct 15797787 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 15797731
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
| || || ||||| |||| || || | |||| || ||||| || || | ||| || |
Sbjct 15797730 CGTGGGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTTG 15797671
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 15797670 ATAAGTCAAC 15797661
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| ||||| |||||||| ||||| |||||||| ||||| ||||||
Sbjct 15817932 TGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 15817873
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 15817872 ATAAAATCAAAGGGATT 15817856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427016690890559
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |