Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq4 172 4e-38
seq16 145 6e-30
seq256 141 7e-29
>seq4
Length=36583390
Score = 172 bits (190), Expect = 4e-38
Identities = 422/631 (67%), Gaps = 19/631 (3%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
|||| || ||||| || || |||| ||||||| ||||| || || ||||| | ||
Sbjct 19718322 TGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGA 19718263
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
| | | || ||||||| || | |||| || | || | || || ||| ||| |
Sbjct 19718262 AAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTG 19718203
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| | |||| |||| | | |||||||| ||| | || |||||||| || |||||||
Sbjct 19718202 CGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGT 19718145
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343
|| |||||||| || ||||| || | ||||| | | || | ||||| || |
Sbjct 19718144 ATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAA 19718085
Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGG-TTCCAGGCGCACA 27400
||| ||||| |||| || ||| | |||| ||| | ||| || ||| | |||||||
Sbjct 19718084 GGGCATGGCAGGGAGTTAGCGCCGTCTGAGG---AAGGCCTTGTGGATTCTAAGCGCACA 19718028
Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 27460
|||||| | |||| | | |||||| | |||| ||| | ||||||||||| |
Sbjct 19718027 TGATGATTCTTCTGTGT-CAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGT 19717969
Query 27461 CCACCCC----CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGC 27516
| || || | | | | | ||| ||| || | || ||||| | ||||||
Sbjct 19717968 CTACTCCTTGACCTACACCA----TCTGAATTCAGATCTTTATATTCTGCCTCAAAATGC 19717913
Query 27517 CTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 27576
||||| || || || || || || || ||||| ||||| | | ||| |||
Sbjct 19717912 CTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGG 19717853
Query 27577 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 27636
||||||||||||||| ||| || |||| ||||||||||| || ||||| || ||
Sbjct 19717852 CTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGT 19717793
Query 27637 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 27696
||| | | || ||||| ||| ||| |||||||| ||| ||||| || ||| |
Sbjct 19717792 TCTCTAGCATTGGTGGATCCT-TGATACGCCACAGCAACTCTTCCACAAC-ACCTGTGCA 19717735
Query 27697 AAGACCCTCTTGGTCGTGAGGAGGGGAAACT 27727
|| || | |||||| || || || |||||||
Sbjct 19717734 AACACACGCTTGGTTGTCAGCAGAGGAAACT 19717704
>seq16
Length=28134011
Score = 145 bits (160), Expect = 6e-30
Identities = 349/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Plus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
|||| || ||||| || || | ||||||| ||||| || || | ||||| |||||
Sbjct 9569086 TGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGT 9569145
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
| | || || ||||||| || || ||||| || || || | || | | | |||
Sbjct 9569146 AAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTT 9569205
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| ||||| ||||| || | ||||||| ||||| || || ||||| || |||||||
Sbjct 9569206 TGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGT 9569264
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343
| || ||| ||||||| ||||| || || ||||| | | | | ||| |||| || |
Sbjct 9569265 CTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACTGGCAAA 9569320
Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403
| | ||||| ||||| | || | || | |||||| || ||||| ||| ||
Sbjct 9569321 GGACTTGGCAAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGA 9569380
Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463
|||| | || || || |||||| | |||| | | | | ||||| |||| || |
Sbjct 9569381 TGATTCTTCTATCCTCAGGGTTGCTTTTGATTGTGGCAATAAC--TTTGCTGCTGGTCTA 9569438
Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523
| || || || || | | |||| || | | ||||| || ||||| ||||| |
Sbjct 9569439 CTCCTTGGCCTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACT 9569498
Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583
| || || || || || |||| ||| | ||| |||| ||| ||| | ||||
Sbjct 9569499 GAAAGCCATAAACTGGGCCCAAATCTTCTTCTAGCCTGGA---GAATCCCAGGCTTTCCA 9569555
Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626
|||||||| ||| || ||| | ||||||||||| || |||||
Sbjct 9569556 CAAAGTCTCGGGACCCATTGACATCCCAGATCTTCACTCCCTT 9569598
>seq256
Length=2651488
Score = 141 bits (156), Expect = 7e-29
Identities = 126/158 (80%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270
||||||| ||| || |||||||| ||||| || | ||||||||||||||| || || |||
Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390
Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330
|| || |||||||| || ||||||||||| ||||| || || ||||| |||| ||
Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330
Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368
|| ||||| || | ||||||||| ||||| || |||||
Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547
|||| || | || ||||| || ||||||||||| || || || || || || || | |
Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767
Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
|||| || || | | ||| ||| ||||||||||||||| || || ||||| |
Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||||||| || ||||| || || ||||| | || ||||| ||
Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369478725197813
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |