Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4 172 4e-38 seq16 145 6e-30 seq256 141 7e-29 >seq4 Length=36583390 Score = 172 bits (190), Expect = 4e-38 Identities = 422/631 (67%), Gaps = 19/631 (3%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || ||||| || || |||| ||||||| ||||| || || ||||| | || Sbjct 19718322 TGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGA 19718263 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | | || ||||||| || | |||| || | || | || || ||| ||| | Sbjct 19718262 AAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTG 19718203 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | | |||| |||| | | |||||||| ||| | || |||||||| || ||||||| Sbjct 19718202 CGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGT 19718145 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 || |||||||| || ||||| || | ||||| | | || | ||||| || | Sbjct 19718144 ATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAA 19718085 Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGG-TTCCAGGCGCACA 27400 ||| ||||| |||| || ||| | |||| ||| | ||| || ||| | ||||||| Sbjct 19718084 GGGCATGGCAGGGAGTTAGCGCCGTCTGAGG---AAGGCCTTGTGGATTCTAAGCGCACA 19718028 Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 27460 |||||| | |||| | | |||||| | |||| ||| | ||||||||||| | Sbjct 19718027 TGATGATTCTTCTGTGT-CAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGT 19717969 Query 27461 CCACCCC----CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGC 27516 | || || | | | | | ||| ||| || | || ||||| | |||||| Sbjct 19717968 CTACTCCTTGACCTACACCA----TCTGAATTCAGATCTTTATATTCTGCCTCAAAATGC 19717913 Query 27517 CTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 27576 ||||| || || || || || || || ||||| ||||| | | ||| ||| Sbjct 19717912 CTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGG 19717853 Query 27577 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 27636 ||||||||||||||| ||| || |||| ||||||||||| || ||||| || || Sbjct 19717852 CTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGT 19717793 Query 27637 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 27696 ||| | | || ||||| ||| ||| |||||||| ||| ||||| || ||| | Sbjct 19717792 TCTCTAGCATTGGTGGATCCT-TGATACGCCACAGCAACTCTTCCACAAC-ACCTGTGCA 19717735 Query 27697 AAGACCCTCTTGGTCGTGAGGAGGGGAAACT 27727 || || | |||||| || || || ||||||| Sbjct 19717734 AACACACGCTTGGTTGTCAGCAGAGGAAACT 19717704 >seq16 Length=28134011 Score = 145 bits (160), Expect = 6e-30 Identities = 349/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || ||||| || || | ||||||| ||||| || || | ||||| ||||| Sbjct 9569086 TGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGT 9569145 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| || || ||||| || || || | || | | | ||| Sbjct 9569146 AAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTT 9569205 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | ||||| ||||| || | ||||||| ||||| || || ||||| || ||||||| Sbjct 9569206 TGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGT 9569264 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||| ||||||| ||||| || || ||||| | | | | ||| |||| || | Sbjct 9569265 CTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACTGGCAAA 9569320 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 | | ||||| ||||| | || | || | |||||| || ||||| ||| || Sbjct 9569321 GGACTTGGCAAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGA 9569380 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | || || || |||||| | |||| | | | | ||||| |||| || | Sbjct 9569381 TGATTCTTCTATCCTCAGGGTTGCTTTTGATTGTGGCAATAAC--TTTGCTGCTGGTCTA 9569438 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || || || || | | |||| || | | ||||| || ||||| ||||| | Sbjct 9569439 CTCCTTGGCCTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACT 9569498 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 | || || || || || |||| ||| | ||| |||| ||| ||| | |||| Sbjct 9569499 GAAAGCCATAAACTGGGCCCAAATCTTCTTCTAGCCTGGA---GAATCCCAGGCTTTCCA 9569555 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626 |||||||| ||| || ||| | ||||||||||| || ||||| Sbjct 9569556 CAAAGTCTCGGGACCCATTGACATCCCAGATCTTCACTCCCTT 9569598 >seq256 Length=2651488 Score = 141 bits (156), Expect = 7e-29 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 ||||||| ||| || |||||||| ||||| || | ||||||||||||||| || || ||| Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330 || || |||||||| || ||||||||||| ||||| || || ||||| |||| || Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || ||||| || | ||||||||| ||||| || ||||| Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || | || ||||| || ||||||||||| || || || || || || || | | Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| || || | | ||| ||| ||||||||||||||| || || ||||| | Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| || || ||||| | || ||||| || Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369478725197813