Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq131 129 1e-24
seq175 107 4e-18
seq40 91.5 3e-13
>seq131
Length=8015323
Score = 129 bits (142), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| ||||||||||| || | | || | ||||||
Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | |||||||||||| | | || |||||||| |||
Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || ||| |||||| |||| | | |||| ||| |||||||||||| || ||
Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATT 2518606
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || || | ||||||||||||| |||||||
Sbjct 2518607 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 93.3 bits (102), Expect = 1e-13
Identities = 110/148 (74%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
|||||| || ||||| | |||||||||||| | | ||| |||||||| ||||| || ||
Sbjct 2520080 TTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 2520139
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077
| ||||| |||| | | |||| ||| ||| || ||||| || || ||||| ||
Sbjct 2520140 TGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196
Query 152078 CGTGAGAGTCTTCACGAAGACCTGCATT 152105
||| | || ||||| |||| |||||||
Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq175
Length=5584636
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
|||||||||||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
|| |||| || || ||||| || ||||| || || | || |||||||| || || ||
Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||| ||| | |||| | ||||| || | |||||||| || || ||
Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||| | || || || || || | ||||| ||
Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296
>seq40
Length=19935044
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| ||||| |||||||| ||||| ||||| || | | ||| | ||||||
Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | ||| ||||| || ||
Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563
Query 152013 TGAATTTT 152020
|| || ||
Sbjct 1219562 TGGATCTT 1219555
Score = 86.0 bits (94), Expect = 1e-11
Identities = 144/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|| || || ||||| || ||||||||||| || | | ||| | |||||||| ||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| |||||||||||||| | | ||| ||||| || || || || ||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| || |||| | | |||| ||| || || || || || || || || |||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065
Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || ||||| ||||| | ||||||
Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCATT 1219038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153727325010733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |