Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq131 129 1e-24 seq175 107 4e-18 seq40 91.5 3e-13 >seq131 Length=8015323 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | || | |||||| Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | |||||||||||| | | || |||||||| ||| Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| |||||| |||| | | |||| ||| |||||||||||| || || Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATT 2518606 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | ||||||||||||| ||||||| Sbjct 2518607 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || ||||| | |||||||||||| | | ||| |||||||| ||||| || || Sbjct 2520080 TTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 2520139 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077 | ||||| |||| | | |||| ||| ||| || ||||| || || ||||| || Sbjct 2520140 TGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| | || ||||| |||| ||||||| Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq175 Length=5584636 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||||||||||||||| ||||| |||||||| || ||||| |||||||| Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || |||| || || ||||| || ||||| || || | || |||||||| || || || Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| ||| | |||| | ||||| || | |||||||| || || || Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| | || || || || || | ||||| || Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296 >seq40 Length=19935044 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| |||||||| ||||| ||||| || | | ||| | |||||| Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563 Query 152013 TGAATTTT 152020 || || || Sbjct 1219562 TGGATCTT 1219555 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| || ||||||||||| || | | ||| | |||||||| || Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| |||||||||||||| | | ||| ||||| || || || || || Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || |||| | | |||| ||| || || || || || || || || ||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| ||||| | |||||| Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCATT 1219038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153727325010733