Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq131 170 4e-37 seq40 134 3e-26 seq24 116 8e-21 seq209 104 5e-17 seq175 102 2e-16 seq113 96.9 7e-15 seq48 95.1 3e-14 seq81 93.3 9e-14 seq122 91.5 3e-13 seq180 89.7 1e-12 seq145 89.7 1e-12 seq47 89.7 1e-12 seq197 87.8 4e-12 seq33 86.0 1e-11 seq59 84.2 5e-11 >seq131 Length=8015323 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || ||| || ||||| || | |||| ||||| |||||||||||||||| Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || || ||||||||||| | || |||||| || Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||||||||| || || | || || ||||| | || || Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || ||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 |||||||| ||||||||||| | || |||||| || || || ||||||||||||||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||||| || ||| | || || ||||| | || || || || ||||| || |||||| Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 283074 GTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || || || || || ||||||||| || Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATTGTC 2520227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2530712 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2530654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2533252 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2533194 >seq40 Length=19935044 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||||| ||| ||||||||||| || || || || || |||||| Sbjct 1219229 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1219170 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | || |||||| || || || || || || |||||||| || |||||| | Sbjct 1219169 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTTC 1219110 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | ||| || || || ||||| ||||| ||||| | ||||| ||| Sbjct 1219109 TCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTACG 1219050 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 1219049 AAAATTTGCATT 1219038 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| ||||| || ||||| | || ||||| ||||| |||||||||| | Sbjct 1219697 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAA 1219638 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1219637 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1219578 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || || || || || |||||||| || || ||| | ||||| || || Sbjct 1219577 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATC 1219531 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 11338477 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11338535 >seq24 Length=24352400 Score = 116 bits (128), Expect = 8e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||| || || | || |||||||||||||| || ||||| || ||| | ||| Sbjct 13198987 TTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACAAATC 13199046 Query 282972 AAACGTTGTTGGTCACCCG-GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 | | | || |||||| | | || ||||||||||| ||||| || ||||| ||| | || Sbjct 13199047 AGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTC 13199106 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| | || || |||| ||||| ||||| ||| ||| ||||| | ||| Sbjct 13199107 GATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCATGAA 13199166 Query 283091 TATCTGCAT 283099 || ||||| Sbjct 13199167 GATTTGCAT 13199175 >seq209 Length=4208363 Score = 104 bits (114), Expect = 5e-17 Identities = 137/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||||| || ||||| ||||| || || || || || |||||||| | Sbjct 4009478 TGGATGTTGTAGTCAGAAA--GTGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 | || |||||| || || || || || || |||| ||| || |||| | | || || Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 |||||| | ||| || || || ||||| ||||| || |||| |||| | ||| || Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654 Query 283095 TGCATTTT 283102 |||||||| Sbjct 4009655 TGCATTTT 4009662 >seq175 Length=5584636 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| |||||||||||| | || | ||||| || |||| ||| || |||||| Sbjct 1836489 TCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAG 1836430 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | ||||| ||| | ||| || || || || |||||||| |||||||| | Sbjct 1836429 ATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTT 1836370 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || | ||| | || |||||||| ||||| ||| | | || || || Sbjct 1836369 TCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACA 1836310 Query 283089 AATATCTGCATTTT 283102 || || ||||| || Sbjct 1836309 AAAATGTGCATCTT 1836296 >seq113 Length=9683949 Score = 96.9 bits (106), Expect = 7e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 282918 ATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976 ||||||||||||| |||| || || ||||| || ||||||| | |||||||||| | Sbjct 8523926 ATGTTGTAGTCAGACAAG-GTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCT 8523984 Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGT 283036 || ||| | ||||| || ||||| || |||||||| || ||||| | | || || Sbjct 8523985 CTGCTGG--AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGT 8524042 Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 ||| | ||| || | ||||||||| ||||| || | | || || | ||| ||||| Sbjct 8524043 ATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTG 8524102 Query 283097 CATTTT 283102 |||||| Sbjct 8524103 CATTTT 8524108 >seq48 Length=17931790 Score = 95.1 bits (104), Expect = 3e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282943 CATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCT 283002 |||| || | ||| || || |||||||||| | ||| || ||| |||| || |||| Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799 Query 283003 TGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGA 283062 | ||||||||||| |||| |||| | || || || ||||| | ||| || || ||||| | Sbjct 9683800 TATCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTA 9683859 Query 283063 TCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||| | |||| || || | ||| ||||||||||| Sbjct 9683860 CAATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTT 9683899 >seq81 Length=12574705 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 11626494 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 11626552 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8495975 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8496033 >seq122 Length=8875436 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||||||||| || ||||| || | ||||| ||||| | ||||| || Sbjct 4650662 ACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 4650721 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| ||||| || |||| ||||| || || |||||||| Sbjct 4650722 GAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4650766 >seq180 Length=5441683 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 419339 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 419397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1723420 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1723362 >seq145 Length=7231261 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 29824 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29882 >seq47 Length=17992032 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||| ||||||||||||| |||| | | ||||| | ||||| | || ||||| Sbjct 7327073 TCCTTTTGAATGTTGTAGTCAGACAAG-TTATGTCCATCTTTCAGTTGCCTGCCAGCAAA 7327015 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | || || ||| ||||| | ||||| || |||||||| ||||||||| | Sbjct 7327014 GATCAGTCTGTGCTGATCAGGAGGAATTCTTTCCTTTTCCTGGATCTTGGCTTTTACGTT 7326955 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || | | || | | || |||||| ||||| || || | ||| || | Sbjct 7326954 TTCTATTGTATCTAAGGGCTCAGCCTTGACAGTGATGGTCTTCCCTGTTAGAGTTTTTAT 7326895 Query 283088 GAATATCT 283095 ||| |||| Sbjct 7326894 GAAAATCT 7326887 >seq197 Length=4675665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCC 168809 |||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||| Sbjct 3279085 ATTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCAGGAGACCAGGGTTCTATTCCCC 3279028 >seq33 Length=21447058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||| |||||||||||||||||| | ||||||| |||||| ||||||||| Sbjct 1199261 ATTAGTATAGTGGTGAGTATCCCTGCCTGTCACCCGGGAGACCAGGGTTCGATTCCCCGA 1199202 >seq59 Length=15706754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTC 282949 ||||| || | ||| ||||| || ||||||||||| || || ||| | ||||| Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG--AGAGTGTGATTGTCCTC 4366216 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || | ||| || | || ||| ||| || ||||| | || |||||||||||||| Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||| || ||||| ||| | | ||| |||| | |||| || |||||||| ||||| Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | |||| || || |||||||| Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046654400059242