Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq131 170 4e-37
seq40 134 3e-26
seq24 116 8e-21
seq209 104 5e-17
seq175 102 2e-16
seq113 96.9 7e-15
seq48 95.1 3e-14
seq81 93.3 9e-14
seq122 91.5 3e-13
seq180 89.7 1e-12
seq145 89.7 1e-12
seq47 89.7 1e-12
seq197 87.8 4e-12
seq33 86.0 1e-11
seq59 84.2 5e-11
>seq131
Length=8015323
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || | || ||| || ||||| || | |||| ||||| ||||||||||||||||
Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || || || || || ||||||||||| | || |||||| ||
Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||||||||||||||| || || | || || ||||| | || ||
Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| || ||||| |||||||| ||||| ||||| ||||| |||||||||
Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|||||||| ||||||||||| | || |||||| || || || |||||||||||||||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||||| || ||| | || || ||||| | || || || || ||||| || ||||||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 283074 GTCAAAGTCTTAACGAATATCTGCATTTTC 283103
|| || || || || || ||||||||| ||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATTGTC 2520227
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 2530712 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2530654
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 2533252 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2533194
>seq40
Length=19935044
Score = 134 bits (148), Expect = 3e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||||||||||| ||| ||||||||||| || || || || || ||||||
Sbjct 1219229 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1219170
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | | || |||||| || || || || || || |||||||| || |||||| |
Sbjct 1219169 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTTC 1219110
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| ||||| | ||| || || || ||||| ||||| ||||| | ||||| |||
Sbjct 1219109 TCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTACG 1219050
Query 283089 AATATCTGCATT 283100
|| || ||||||
Sbjct 1219049 AAAATTTGCATT 1219038
Score = 104 bits (114), Expect = 5e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| ||||| || ||||| | || ||||| ||||| |||||||||| |
Sbjct 1219697 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAA 1219638
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || || || || || |||||||| | | || |||||| ||
Sbjct 1219637 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1219578
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039
|| || || || || |||||||| || || ||| | ||||| || ||
Sbjct 1219577 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATC 1219531
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 11338477 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11338535
>seq24
Length=24352400
Score = 116 bits (128), Expect = 8e-21
Identities = 140/189 (74%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||| || || | || |||||||||||||| || ||||| || ||| | |||
Sbjct 13198987 TTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACAAATC 13199046
Query 282972 AAACGTTGTTGGTCACCCG-GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030
| | | || |||||| | | || ||||||||||| ||||| || ||||| ||| | ||
Sbjct 13199047 AGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTC 13199106
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| | || || |||| ||||| ||||| ||| ||| ||||| | |||
Sbjct 13199107 GATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCATGAA 13199166
Query 283091 TATCTGCAT 283099
|| |||||
Sbjct 13199167 GATTTGCAT 13199175
>seq209
Length=4208363
Score = 104 bits (114), Expect = 5e-17
Identities = 137/188 (73%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974
|||||||||||||||| || ||||| ||||| || || || || || |||||||| |
Sbjct 4009478 TGGATGTTGTAGTCAGAAA--GTGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534
Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034
| || |||||| || || || || || || |||| ||| || |||| | | || ||
Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594
Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094
|||||| | ||| || || || ||||| ||||| || |||| |||| | ||| ||
Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654
Query 283095 TGCATTTT 283102
||||||||
Sbjct 4009655 TGCATTTT 4009662
>seq175
Length=5584636
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| |||||||||||| | || | ||||| || |||| ||| || ||||||
Sbjct 1836489 TCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAG 1836430
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||| | ||||| ||| | ||| || || || || |||||||| |||||||| |
Sbjct 1836429 ATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTT 1836370
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || || || || | ||| | || |||||||| ||||| ||| | | || || ||
Sbjct 1836369 TCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACA 1836310
Query 283089 AATATCTGCATTTT 283102
|| || ||||| ||
Sbjct 1836309 AAAATGTGCATCTT 1836296
>seq113
Length=9683949
Score = 96.9 bits (106), Expect = 7e-15
Identities = 135/186 (73%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 282918 ATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976
||||||||||||| |||| || || ||||| || ||||||| | |||||||||| |
Sbjct 8523926 ATGTTGTAGTCAGACAAG-GTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCT 8523984
Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGT 283036
|| ||| | ||||| || ||||| || |||||||| || ||||| | | || ||
Sbjct 8523985 CTGCTGG--AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGT 8524042
Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
||| | ||| || | ||||||||| ||||| || | | || || | ||| |||||
Sbjct 8524043 ATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTG 8524102
Query 283097 CATTTT 283102
||||||
Sbjct 8524103 CATTTT 8524108
>seq48
Length=17931790
Score = 95.1 bits (104), Expect = 3e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 282943 CATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCT 283002
|||| || | ||| || || |||||||||| | ||| || ||| |||| || ||||
Sbjct 9683740 CATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCT 9683799
Query 283003 TGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGA 283062
| ||||||||||| |||| |||| | || || || ||||| | ||| || || ||||| |
Sbjct 9683800 TATCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTA 9683859
Query 283063 TCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|||| | |||| || || | ||| |||||||||||
Sbjct 9683860 CAATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTT 9683899
>seq81
Length=12574705
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 11626494 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 11626552
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 8495975 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8496033
>seq122
Length=8875436
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
|||||||||||||||||| || ||||| || | ||||| ||||| | ||||| ||
Sbjct 4650662 ACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 4650721
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||| ||||| || |||| ||||| || || ||||||||
Sbjct 4650722 GAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4650766
>seq180
Length=5441683
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 419339 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 419397
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1723420 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1723362
>seq145
Length=7231261
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 29824 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29882
>seq47
Length=17992032
Score = 89.7 bits (98), Expect = 1e-12
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
|| ||||| ||||||||||||| |||| | | ||||| | ||||| | || |||||
Sbjct 7327073 TCCTTTTGAATGTTGTAGTCAGACAAG-TTATGTCCATCTTTCAGTTGCCTGCCAGCAAA 7327015
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
||||| | || || ||| ||||| | ||||| || |||||||| ||||||||| |
Sbjct 7327014 GATCAGTCTGTGCTGATCAGGAGGAATTCTTTCCTTTTCCTGGATCTTGGCTTTTACGTT 7326955
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || || || | | || | | || |||||| ||||| || || | ||| || |
Sbjct 7326954 TTCTATTGTATCTAAGGGCTCAGCCTTGACAGTGATGGTCTTCCCTGTTAGAGTTTTTAT 7326895
Query 283088 GAATATCT 283095
||| ||||
Sbjct 7326894 GAAAATCT 7326887
>seq197
Length=4675665
Score = 87.8 bits (96), Expect = 4e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCC 168809
|||||||||||||| |||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 3279085 ATTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCAGGAGACCAGGGTTCTATTCCCC 3279028
>seq33
Length=21447058
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||||| |||||||||||||||||| | ||||||| |||||| |||||||||
Sbjct 1199261 ATTAGTATAGTGGTGAGTATCCCTGCCTGTCACCCGGGAGACCAGGGTTCGATTCCCCGA 1199202
>seq59
Length=15706754
Score = 84.2 bits (92), Expect = 5e-11
Identities = 146/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTC 282949
||||| || | ||| ||||| || ||||||||||| || || ||| | |||||
Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG--AGAGTGTGATTGTCCTC 4366216
Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009
|| | ||| || | || ||| ||| || ||||| | || ||||||||||||||
Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276
Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069
||| || ||||| ||| | | ||| |||| | |||| || |||||||| |||||
Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336
Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || | |||| || || ||||||||
Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046654400059242
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