Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq87 188 7e-43 seq23 109 6e-19 >seq87 Length=11743621 Score = 188 bits (208), Expect = 7e-43 Identities = 377/555 (68%), Gaps = 3/555 (1%) Strand=Plus/Plus Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573 ||| ||||| |||| | ||||| || ||||| |||||||| ||| |||| | || || Sbjct 8842450 AAAGTCACAGTGTAAACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGG 8842509 Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633 ||||||||||||||| || | || ||||| | ||||| || || |||||||| || || Sbjct 8842510 CATTAATCCTCGTTTCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCC 8842569 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693 || | | |||||||| ||| || ||||| | || || | | || ||||| Sbjct 8842570 TTCTATTGGGGCAAAGGCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCA 8842629 Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753 | | ||||| |||||| |||||||| |||| |||||| || || ||||| Sbjct 8842630 ATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG-TTCAATGGCATTGAAGAG 8842688 Query 23754 AAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGA 23813 ||| |||| | |||| | || || || ||| | || | | | ||||||||||| Sbjct 8842689 AAACTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGA 8842748 Query 23814 ATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAAC 23873 ||| || ||||| || ||||| || || ||||| | ||| | ||||| | | ||||| Sbjct 8842749 ATGTATGTTTTCCATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAAC 8842808 Query 23874 ATCATTAAAAAATC-TTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGA 23932 | | ||||| ||| || ||||| || | || ||||| || || ||||||| Sbjct 8842809 TTGTTGGCTAAATCGCACCAGC-AAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGA 8842867 Query 23933 AAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAA 23992 |||| ||||||| | | |||||| |||||| | || | || ||| | | || Sbjct 8842868 AAGCCAGAACATGTGATGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAA 8842927 Query 23993 TATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACA 24052 | || || || | ||| | || ||| | |||||||| | | || |||||||| Sbjct 8842928 TGTCCTTGGAAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 8842987 Query 24053 TTAGCCAAATATCAT 24067 | |||||||||||| Sbjct 8842988 TCTGCCAAATATCAT 8843002 >seq23 Length=24341844 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| | |||||| |||||||| | || ||||||||||||||||| || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || || |||||||| || || || || || |||||||| Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 23653 ACAAGACG 23660 |||| ||| Sbjct 8996165 ACAACACG 8996172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521446782892200