Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq40 125 5e-24 seq131 116 3e-21 seq209 93.3 3e-14 seq24 89.7 4e-13 >seq40 Length=19935044 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || ||| | || ||||||||||| || ||||| Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | | |||||| || | ||| | ||||| || ||| ||||| ||| | || Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTAC-GT 1219112 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| || ||||||||||| || || ||||||||||| |||||||| | Sbjct 1219111 TCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTA 1219052 Query 44325 CGAAGATTTGCAT 44337 |||| |||||||| Sbjct 1219051 CGAAAATTTGCAT 1219039 >seq131 Length=8015323 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || |||||||| |||||| ||| || ||||||||||| || | Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || ||||||||||| | |||||| || | ||| Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| || ||||| ||| | | ||| | |||||||| || || || Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || | ||||||||||||||| ||||| Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 || ||||| ||||||||||| | |||||| || | ||| | |||||||| || ||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || ||| | | |||| | |||||||| || |||||||| | || || || || || Sbjct 2520138 TT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCATGATGTGA-ATGAAAA 44351 ||| | ||| ||||| ||||| ||||| | ||| | ||||| Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATTGTCTGAGAAGAAAA 2520238 >seq209 Length=4208363 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 ||||||||||| || | ||| ||| | || || || ||||| || |||||||| | Sbjct 4009478 TGGATGTTGTAGTCAGAAAGT--GCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 | |||||| || | ||| | ||||| || ||| | ||| ||| | ||||| | || Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTA-TGTTCTCAAT 4009593 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || ||||||||||| || || ||||| || || ||| |||| | |||||| Sbjct 4009594 GGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGAT 4009653 Query 44332 TTGCAT 44337 |||||| Sbjct 4009654 TTGCAT 4009659 >seq24 Length=24352400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 44118 TCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGC 44177 |||| | || | |||||| || | | || ||| |||||||| || || | ||| || Sbjct 13198956 TCAGACGCAGCGCCAGGTACAG-GAGGACTGCTTCTGGATGTTATACTCTGAGAGAGTGC 13199014 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG-GCACACCT 44236 | | || |||||||| || || ||| | |||| | ||||||| || | | | | || Sbjct 13199015 GGCCATCCTCCAGCTGTTTGCCTGCACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCC 13199074 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCAC 44295 ||||| ||| || || |||| | |||| | |||||||| || || ||||| | Sbjct 13199075 TCCTTGTCCTGGATTTTG-GCTTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAA 13199133 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||| | |||||||||| |||||||||||| Sbjct 13199134 GGTGATGGTCTTGCCCATCAGGGTCTTCATGAAGATTTGCAT 13199175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359962658577291