Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq40 125 5e-24
seq131 116 3e-21
seq209 93.3 3e-14
seq24 89.7 4e-13
>seq40
Length=19935044
Score = 125 bits (138), Expect = 5e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| || | || ||| | || ||||||||||| || |||||
Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||| | | |||||| || | ||| | ||||| || ||| ||||| ||| | ||
Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTAC-GT 1219112
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | |||||||| || ||||||||||| || || ||||||||||| |||||||| |
Sbjct 1219111 TCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTA 1219052
Query 44325 CGAAGATTTGCAT 44337
|||| ||||||||
Sbjct 1219051 CGAAAATTTGCAT 1219039
>seq131
Length=8015323
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || |||| | || |||||||| |||||| ||| || ||||||||||| || |
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || ||||||||||| || ||||||||||| | |||||| || | |||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| |||||||| || ||||| ||| | | ||| | |||||||| || || ||
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | || || ||||| || || | ||||||||||||||| |||||
Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 118/162 (73%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251
|| ||||| ||||||||||| | |||||| || | ||| | |||||||| || |||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310
|| ||| | | |||| | |||||||| || |||||||| | || || || || ||
Sbjct 2520138 TT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 2520196
Query 44311 CGTGAGGGTCTTCACGAAGATTTGCATGATGTGA-ATGAAAA 44351
||| | ||| ||||| ||||| ||||| | ||| | |||||
Sbjct 2520197 CGTTAAGGTTTTCACAAAGATCTGCATTGTCTGAGAAGAAAA 2520238
>seq209
Length=4208363
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/186 (73%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212
||||||||||| || | ||| ||| | || || || ||||| || |||||||| |
Sbjct 4009478 TGGATGTTGTAGTCAGAAAGT--GCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534
Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271
| |||||| || | ||| | ||||| || ||| | ||| ||| | ||||| | ||
Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTA-TGTTCTCAAT 4009593
Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331
|||||| || ||||||||||| || || ||||| || || ||| |||| | ||||||
Sbjct 4009594 GGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGAT 4009653
Query 44332 TTGCAT 44337
||||||
Sbjct 4009654 TTGCAT 4009659
>seq24
Length=24352400
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 44118 TCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGC 44177
|||| | || | |||||| || | | || ||| |||||||| || || | ||| ||
Sbjct 13198956 TCAGACGCAGCGCCAGGTACAG-GAGGACTGCTTCTGGATGTTATACTCTGAGAGAGTGC 13199014
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG-GCACACCT 44236
| | || |||||||| || || ||| | |||| | ||||||| || | | | | ||
Sbjct 13199015 GGCCATCCTCCAGCTGTTTGCCTGCACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCC 13199074
Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCAC 44295
||||| ||| || || |||| | |||| | |||||||| || || ||||| |
Sbjct 13199075 TCCTTGTCCTGGATTTTG-GCTTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAA 13199133
Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||| | |||||||||| ||||||||||||
Sbjct 13199134 GGTGATGGTCTTGCCCATCAGGGTCTTCATGAAGATTTGCAT 13199175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359962658577291
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |