Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq21 152 7e-32 seq38 105 1e-17 >seq21 Length=24716270 Score = 152 bits (168), Expect = 7e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| ||| ||| |||||||| || ||||| || ||||||||||| Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || |||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || || || || | || || |||||||| | Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | || ||||| | || || || || |||| Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATAAACCTCTCCATCGATTATCT 24232429 Score = 147 bits (162), Expect = 3e-30 Identities = 218/309 (71%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| ||||| | |||||| | | ||||| ||||| || || || |||| |||||||| Sbjct 24230303 ATCTGGAACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTG 24230362 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 || | || | |||| ||| || || || ||||| || |||||||| |||||||| Sbjct 24230363 GATTGAGGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCA 24230422 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 ||| || || || || || ||||||| ||||| | |||||| || || || | Sbjct 24230423 GTAGTGAGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAG 24230482 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | ||| ||||||| ||||| || | ||||| |||||||| |||| | | | Sbjct 24230483 TTCTACCATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGG 24230542 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 |||||||||| ||| || | ||| || || || ||| | || ||||| || ||||| Sbjct 24230543 ATACAGCTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTT 24230602 Query 8578 TTCTCCTGT 8586 |||||||| Sbjct 24230603 CTCTCCTGT 24230611 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| |||| |||||| ||||| || || |||||| ||| ||| | || Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||| ||||||| | | || ||| || || | Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAGTTC 24233519 Query 9829 TGTTTTACCTG 9839 | | || |||| Sbjct 24233520 TTTCTTTCCTG 24233530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || || ||||| || ||||| || ||||| || || | ||| Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||| ||||| || |||||||||||| || | |||| | || || | || Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 |||||||||||||||| ||||| |||| Sbjct 24234265 TGGGCTGTCAATCAAATGTGATCTTGCTGA 24234294 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10382 ACAATCTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTG 10441 |||| |||||| ||| |||| | | ||||| || ||| | |||||||| ||||| Sbjct 24235436 ACAAACTTACGTATTGAACAGTTTTCACCATAGAATCCTGTACGAGTGCAATCACATTTA 24235495 Query 10442 TACTGATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAA 10501 ||||||| || || ||||||||| | |||| |||||||||||| | ||| || ||| Sbjct 24235496 TACTGATCAAATCCTGTGGTCATGCATACACCTCGGTTTTGACACGGGTTGGAACAGCAA 24235555 Query 10502 GGGTTGGCTACGAT 10515 || || ||||| || Sbjct 24235556 GGATTTGCTACAAT 24235569 >seq38 Length=20210872 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| || | || ||||| || |||||||||||||||||| | || | Sbjct 6384785 TCTTGACAATGTTGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTACTCTGGAG 6384726 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| | ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 6384725 AACAGATGGCATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 6384666 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| || ||| || ||| || | | | || | || | ||||| Sbjct 6384665 TCTCCCCAAAGATGGAATTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCA 6384606 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| || || || || | | || || || |||||||| |||||| Sbjct 6384605 TGGCATCGATATCACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTCTCCT 6384550 Score = 100 bits (110), Expect = 4e-16 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | ||||||||| | || || || |||| | ||| | | Sbjct 6371042 CTCACCCCATGGCCCAAGGCCTTAGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 6370985 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| || |||||||| |||||||||||||||| | ||||||||| ||||||| Sbjct 6370984 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGAT 6370925 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 6370924 CAGGTATGAACTTCCTCC 6370907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716820139849920