Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq21 152 7e-32
seq38 105 1e-17
>seq21
Length=24716270
Score = 152 bits (168), Expect = 7e-32
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| ||| ||| |||||||| || ||||| || |||||||||||
Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| || |||| ||||| || |||||||||||||| || ||||| ||||| |||||
Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| || || || || | || || |||||||| |
Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | || ||||| | || || || || ||||
Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATAAACCTCTCCATCGATTATCT 24232429
Score = 147 bits (162), Expect = 3e-30
Identities = 218/309 (71%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337
||| ||||| | |||||| | | ||||| ||||| || || || |||| ||||||||
Sbjct 24230303 ATCTGGAACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTG 24230362
Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397
|| | || | |||| ||| || || || ||||| || |||||||| ||||||||
Sbjct 24230363 GATTGAGGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCA 24230422
Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457
||| || || || || || ||||||| ||||| | |||||| || || || |
Sbjct 24230423 GTAGTGAGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAG 24230482
Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517
|| | ||| ||||||| ||||| || | ||||| |||||||| |||| | | |
Sbjct 24230483 TTCTACCATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGG 24230542
Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577
|||||||||| ||| || | ||| || || || ||| | || ||||| || |||||
Sbjct 24230543 ATACAGCTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTT 24230602
Query 8578 TTCTCCTGT 8586
||||||||
Sbjct 24230603 CTCTCCTGT 24230611
Score = 120 bits (132), Expect = 4e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
||| |||||||| |||| |||||| ||||| || || |||||| ||| ||| | ||
Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
||| |||| | || | |||||| ||| ||||||| | | || ||| || || |
Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAGTTC 24233519
Query 9829 TGTTTTACCTG 9839
| | || ||||
Sbjct 24233520 TTTCTTTCCTG 24233530
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| || || | || || ||||| || ||||| || ||||| || || | |||
Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
||||||||| ||||| || |||||||||||| || | |||| | || || | ||
Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|||||||||||||||| ||||| ||||
Sbjct 24234265 TGGGCTGTCAATCAAATGTGATCTTGCTGA 24234294
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 10382 ACAATCTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTG 10441
|||| |||||| ||| |||| | | ||||| || ||| | |||||||| |||||
Sbjct 24235436 ACAAACTTACGTATTGAACAGTTTTCACCATAGAATCCTGTACGAGTGCAATCACATTTA 24235495
Query 10442 TACTGATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAA 10501
||||||| || || ||||||||| | |||| |||||||||||| | ||| || |||
Sbjct 24235496 TACTGATCAAATCCTGTGGTCATGCATACACCTCGGTTTTGACACGGGTTGGAACAGCAA 24235555
Query 10502 GGGTTGGCTACGAT 10515
|| || ||||| ||
Sbjct 24235556 GGATTTGCTACAAT 24235569
>seq38
Length=20210872
Score = 105 bits (116), Expect = 1e-17
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| || ||| || | || ||||| || |||||||||||||||||| | || |
Sbjct 6384785 TCTTGACAATGTTGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTACTCTGGAG 6384726
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| | ||| | | |||||| |||||||| || |||||||| | || | || |
Sbjct 6384725 AACAGATGGCATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 6384666
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||||| || ||| || ||| || | | | || | || | |||||
Sbjct 6384665 TCTCCCCAAAGATGGAATTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCA 6384606
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| |||| || || || || | | || || || |||||||| ||||||
Sbjct 6384605 TGGCATCGATATCACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTCTCCT 6384550
Score = 100 bits (110), Expect = 4e-16
Identities = 106/138 (77%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707
|| |||||||| |||| | ||||||||| | || || || |||| | ||| | |
Sbjct 6371042 CTCACCCCATGGCCCAAGGCCTTAGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 6370985
Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767
| |||||||| || |||||||| |||||||||||||||| | ||||||||| |||||||
Sbjct 6370984 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGAT 6370925
Query 9768 CGGGAGTGAAGGTCCTCC 9785
| || |||| ||||||
Sbjct 6370924 CAGGTATGAACTTCCTCC 6370907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716820139849920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |