Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq40 163 7e-35 seq175 118 3e-21 seq24 114 3e-20 seq131 113 1e-19 >seq40 Length=19935044 Score = 163 bits (180), Expect = 7e-35 Identities = 165/214 (77%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||||| |||||||||| || || || || ||||| || |||||||| |||| Sbjct 1219031 AGGTCAGAATGC---AAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGG 1219087 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 ||||| | ||||||||||||||||| || ||||| ||||| |||||||| |||| Sbjct 1219088 TGGAACCCAGTGACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAGAAGGCATCC 1219147 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| |||||||| | || ||||| || || || ||||| |||||||| | |||||| Sbjct 1219148 CTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 1219207 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 | || || ||| |||| || || || || ||||| Sbjct 1219208 CTGACTACAACATCCAGAAGGAGTCGACCCTGCA 1219241 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||| Sbjct 1219531 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1219590 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | |||||| | || || || Sbjct 1219591 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1219650 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| ||||| ||||||||||| Sbjct 1219651 ATCCAGAAAGAGTCAACTCTGCATCTTGT 1219679 >seq175 Length=5584636 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || | || || || ||||| || |||| ||| |||||| Sbjct 1836302 CACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCAGAT 1836361 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| ||||| ||||||||||| |||| || || || Sbjct 1836362 ACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAACAG 1836421 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || ||| | || ||||||||| ||| | || || ||| | Sbjct 1836422 AGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAACATT 1836481 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| | |||||| Sbjct 1836482 CAAAAGGAGTCTACTCTTCATCTTGTGTAGAGACT 1836516 >seq24 Length=24352400 Score = 114 bits (126), Expect = 3e-20 Identities = 140/188 (74%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||| |||| || || | || || || |||||| ||||||| || || ||| Sbjct 13199172 CAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGA--GCCCAGTG 13199115 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC-CTCCGGACCAG 178040 |||||||||||||||||||| || || |||||||| || || |||| | || |||||| Sbjct 13199114 ACACCATCGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACCAG 13199055 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || || | || || |||||||| || ||||| | ||||| | || |||||| Sbjct 13199054 CAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATAAC 13198995 Query 178101 GTCCAAAA 178108 |||| || Sbjct 13198994 ATCCAGAA 13198987 >seq131 Length=8015323 Score = 113 bits (124), Expect = 1e-19 Identities = 113/145 (78%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| |||||||| |||||||| || ||| Sbjct 2520220 CAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGA--GCCCAGTG 2520163 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| |||||| || ||||| ||||| |||||||| ||||||| Sbjct 2520162 ACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGC 2520103 Query 178042 AACGACTTATCTTCGCCGGAAAACA 178066 | | | ||||| || || ||||| Sbjct 2520102 AGAGGTTGATCTTTGCTGGGAAACA 2520078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203633681597662