Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq40 163 7e-35
seq175 118 3e-21
seq24 114 3e-20
seq131 113 1e-19
>seq40
Length=19935044
Score = 163 bits (180), Expect = 7e-35
Identities = 165/214 (77%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| | ||||| |||||||||| || || || || ||||| || |||||||| ||||
Sbjct 1219031 AGGTCAGAATGC---AAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGG 1219087
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
||||| | ||||||||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 1219088 TGGAACCCAGTGACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAGAAGGCATCC 1219147
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
|||| |||||||| | || ||||| || || || ||||| |||||||| | ||||||
Sbjct 1219148 CTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 1219207
Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123
| || || ||| |||| || || || || |||||
Sbjct 1219208 CTGACTACAACATCCAGAAGGAGTCGACCCTGCA 1219241
Score = 129 bits (142), Expect = 1e-24
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 1219531 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1219590
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | || ||||| || || || ||||| |||||||| | |||||| | || || ||
Sbjct 1219591 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1219650
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| ||||| |||||||||||
Sbjct 1219651 ATCCAGAAAGAGTCAACTCTGCATCTTGT 1219679
>seq175
Length=5584636
Score = 118 bits (130), Expect = 3e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||| || | || || || ||||| || |||| ||| ||||||
Sbjct 1836302 CACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCAGAT 1836361
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| ||||| ||||| ||||||||||| |||| || || ||
Sbjct 1836362 ACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAACAG 1836421
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || ||| | || ||||||||| ||| | || || ||| |
Sbjct 1836422 AGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAACATT 1836481
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| | ||||||
Sbjct 1836482 CAAAAGGAGTCTACTCTTCATCTTGTGTAGAGACT 1836516
>seq24
Length=24352400
Score = 114 bits (126), Expect = 3e-20
Identities = 140/188 (74%), Gaps = 5/188 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| ||| |||| || || | || || || |||||| ||||||| || || |||
Sbjct 13199172 CAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGA--GCCCAGTG 13199115
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC-CTCCGGACCAG 178040
|||||||||||||||||||| || || |||||||| || || |||| | || ||||||
Sbjct 13199114 ACACCATCGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACCAG 13199055
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | || || | || || |||||||| || ||||| | ||||| | || ||||||
Sbjct 13199054 CAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATAAC 13198995
Query 178101 GTCCAAAA 178108
|||| ||
Sbjct 13198994 ATCCAGAA 13198987
>seq131
Length=8015323
Score = 113 bits (124), Expect = 1e-19
Identities = 113/145 (78%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| | || || ||||| |||||||| |||||||| || |||
Sbjct 2520220 CAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGA--GCCCAGTG 2520163
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| |||||| || ||||| ||||| |||||||| |||||||
Sbjct 2520162 ACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGC 2520103
Query 178042 AACGACTTATCTTCGCCGGAAAACA 178066
| | | ||||| || || |||||
Sbjct 2520102 AGAGGTTGATCTTTGCTGGGAAACA 2520078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203633681597662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |