Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq131 111 1e-19 seq40 100 3e-16 >seq131 Length=8015323 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||||||| ||| ||||| ||||| ||||| || ||||| || | || || Sbjct 2518433 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCC 2518492 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || |||| | ||| ||||| | |||| || |||||||| | Sbjct 2518493 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 2518552 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| || || | || || || ||| Sbjct 2518553 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTA 2518612 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 2518613 CCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 >seq40 Length=19935044 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| || ||||||||| ||||| ||||| || || ||||| | || || |||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| || || || || | ||| ||||| | || | || || || ||| ||| || Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 41780 TGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839 ||| | | | ||||| || | |||||||||| || || || || ||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 41840 AGCGTCTTTACGAAAATCTGCAT 41862 || |||||||||||||| ||||| Sbjct 1219061 AGGGTCTTTACGAAAATTTGCAT 1219039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462267460647600