Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12132 284 1e-71 seq23499 241 1e-58 seq22719 235 6e-57 seq27380 102 8e-17 >seq12132 Length=2475592 Score = 284 bits (314), Expect = 1e-71 Identities = 597/880 (68%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || || |||||||| | || || || Sbjct 57301 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGT 57242 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 57241 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 57184 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| | || ||||| || || ||||| ||||| |||||||| Sbjct 57183 GTTCCAGCATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCA 57124 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || | ||| || || | || || ||||| ||| || | Sbjct 57123 TCCCAATGAGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT 57064 Query 16902 CCTTAATAATACTAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 |||| || | ||| |||| ||||| || ||| | ||| || ||||| |||||| Sbjct 57063 TGATAATTATT-TCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATC 57005 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| Sbjct 57004 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTG 56945 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| |||||||||||| | ||| ||||| | || || || ||||||||| Sbjct 56944 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 56885 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | ||||| | || || || | ||||| Sbjct 56884 AAGATGCCTTCCACTGCAGCAAAGGCTA-CGCGCGTTCACCATAGGTAGCCTGTTTGTCC 56826 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | |||||| | |||| || | || ||| | ||| ||||||||| ||||| Sbjct 56825 CCAATCCAGCGCAAGGCCCAATCTGACTT---CTTGACACAAGGCATCGTTTCAATGGCA 56769 Query 17201 TT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 || | | || ||| | |||| | | || |||| || || || || || || || | Sbjct 56768 TTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTAT 56711 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 ||||||| || |||||||| |||||||| || || || || || || || |||||||| | Sbjct 56710 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTG 56651 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 || |||||||| || ||||| ||| | | ||||| || || ||| | || || | Sbjct 56650 TAATCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTG 56591 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCC 17438 | || || || |||| | || || || ||| | || || || | || || Sbjct 56590 CTGCAAATAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCGGGCTTCAGGGATTCCC 56531 Query 17439 AGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 ||| | | || ||||| | ||||| || |||| |||||| || ||| | |||| Sbjct 56530 AGTGCCAAATGTCCTTGGACAGCTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCT 56471 Query 17499 TTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||||||| | ||| ||| | | ||| | | |||||| Sbjct 56470 TCTTATACATGTGCCAGATACCGTGGTACTCGACGGGGAA 56431 >seq23499 Length=2348749 Score = 241 bits (266), Expect = 1e-58 Identities = 498/734 (68%), Gaps = 8/734 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || || | || | | || || |||||||| || || || || Sbjct 2215611 ACTCCCATCCTCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 2215670 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 2215671 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 2215728 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| || || ||||| | || | ||| ||||| |||||||| Sbjct 2215729 GTTCCAGCATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCA 2215788 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || | || || || | || || || | || ||||||| ||| || | Sbjct 2215789 TCCCAGTGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCAT 2215848 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 |||| || || | ||||| || ||| | ||| | ||||| ||||||| Sbjct 2215849 TGATAATTATTTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCA 2215908 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 2215909 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGA 2215968 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| |||||||||||| | ||| ||||| | || || || |||||||||| Sbjct 2215969 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 2216028 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | ||||| | || || | ||||||| | Sbjct 2216029 AAATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCC 2216088 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 | |||| | | |||| || || || | ||| | ||| ||||||||| | ||| | Sbjct 2216089 CAGTCCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCAT 2216148 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | | | || ||| | ||| ||| | || |||| || || || || || || || || Sbjct 2216149 TGAAGAGAAATTC-CCTTTCGCTG-GGATCTTTTATGTAAGTGTCAATAAGGAGACTATA 2216206 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || |||||||| ||| |||| || || ||||| || || || |||||||| | Sbjct 2216207 CATTTCAGAATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGT 2216266 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || ||||| || | ||||| ||| | | ||||| || || ||||| | ||||| Sbjct 2216267 AATCTGAACCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGC 2216326 Query 17380 GGCGAAAAACGCCA 17393 || || || |||| Sbjct 2216327 TGCAAAGAAAGCCA 2216340 >seq22719 Length=8987742 Score = 235 bits (260), Expect = 6e-57 Identities = 581/879 (66%), Gaps = 22/879 (3%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || || |||||||| || || || || Sbjct 8555303 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 8555244 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || |||| ||||| || ||||||| || | | |||| Sbjct 8555243 GAAATATTCTCCATAAAGGCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 8555186 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| || || ||||| || || ||||| ||||| ||| |||| Sbjct 8555185 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 8555126 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || | || || || | || || ||||| ||| || | Sbjct 8555125 TCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT 8555066 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 | |||| || |||| ||||| || ||| | ||| | ||||| ||||||| Sbjct 8555065 TCATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATCA 8555006 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 8555005 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGA 8554946 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| |||||||||||| | ||| ||||| | || || || |||||||||| Sbjct 8554945 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 8554886 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | ||||| | || || || ||||||| | Sbjct 8554885 AGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCC 8554826 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||||| | |||| || || || | || | ||| ||||||||| ||||| | Sbjct 8554825 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCAT 8554766 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | ||| || ||| | |||| | | || |||| | || || || || | || || Sbjct 8554765 TGAAAAGAAATTCCC--TTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATA 8554708 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || |||||||| |||||||| || | || |||| ||| | Sbjct 8554707 CATTTCAGAATGTATGTTTTCCATGGC--------------AATAACAGCGGGTTTCTGT 8554662 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || |||||||| | ||| | ||| | | ||||| || || ||| | || || || Sbjct 8554661 AATCTGAACTTCTTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGC 8554602 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || || || |||| | || || || ||| | || | || | || ||| Sbjct 8554601 TGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTTGGGCTTCAGGGATTCCCA 8554542 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || | | || ||| | | ||||| || |||| |||||| || ||| | ||||| Sbjct 8554541 GTGCCGAATGTCCTTGAACAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTT 8554482 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||||| | ||| |||| | ||| | |||||||| Sbjct 8554481 CTTATACATCTGCCAGATATTGTGGTACTCGATGGGGAA 8554443 >seq27380 Length=10165399 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 7666511 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7666570 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 7666571 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7666630 Query 17106 C 17106 | Sbjct 7666631 C 7666631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517358494326960