Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq12132 266 3e-66 seq23499 230 2e-55 seq22719 226 3e-54 seq18140 102 8e-17 seq27380 89.7 5e-13 >seq12132 Length=2475592 Score = 266 bits (294), Expect = 3e-66 Identities = 598/887 (67%), Gaps = 16/887 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || ||||||||||| | ||| || | Sbjct 57301 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGT 57242 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || ||||||| ||| | |||| Sbjct 57241 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 57184 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| |||| ||||| || || ||||| ||||| ||| ||| || Sbjct 57183 GTTCCAGCATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAGTTC 57125 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | ||| | || | || | ||||||||| ||| || Sbjct 57124 ATCCCAATGAGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCA 57065 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| || ||| ||| || || ||| | || ||||||||| ||||| Sbjct 57064 TTGATAATTATTTCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATC 57005 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||||||| |||||||| || ||||| || Sbjct 57004 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTG 56945 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 56944 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 56885 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | ||||| || | ||||| | || ||||| | ||| | Sbjct 56884 AAGATGCCTTCCACTGCAGCAAAGGCTA-CGCGCGTTCACCATAGGTAGCCTGTTTGTCC 56826 Query 16379 CGAATCCATTTCTGTACCCATTC-GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | |||| || | ||| ||| | |||| ||||||||| ||||| Sbjct 56825 CCAATCCAGCGCAAGGCCCAATCTGACTTCTTG----ACACAAGGCATCGTTTCAATGGC 56770 Query 16438 CTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| | |||| | ||| |||| || || ||||| || | ||| Sbjct 56769 ATTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTA 56712 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || |||||||| || ||||| || || || |||||||| || || || || Sbjct 56711 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCT 56652 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||||| || |||||| ||| ||| ||| ||||| || || | |||||| Sbjct 56651 GTAATCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTT 56592 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || ||||| || |||| | ||| || || ||| | || || | | || | | Sbjct 56591 GCTGCAAATAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCGGGCTTCAGGGATTCC 56532 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | || ||||| | ||||| || || | ||||| ||| ||| | ||| Sbjct 56531 CAGTGCCAAATGTCCTTGGACAGCTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCC 56472 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || |||||||| | ||| ||| | | ||| | | ||| || | ||| Sbjct 56471 TTCTTATACATGTGCCAGATACCGTGGTACTCGACGGGGAAAATGAC 56425 >seq23499 Length=2348749 Score = 230 bits (254), Expect = 2e-55 Identities = 498/735 (68%), Gaps = 10/735 (1%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || |||| || | | || ||||||||||| ||||| || | Sbjct 2215611 ACTCCCATCCTCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 2215670 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || ||||||| ||| | |||| Sbjct 2215671 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 2215728 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| | || | ||| ||||| ||| ||| || Sbjct 2215729 GTTCCAGCATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGT-GCAGTTC 2215787 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || | || || || | || | || | || | || |||| | ||| || Sbjct 2215788 ATCCCAGTGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCA 2215847 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| || || | | | || || ||| | || | ||||||| ||||| Sbjct 2215848 TTGATAATTATTTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATC 2215907 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||||||| |||||||| || ||||| || Sbjct 2215908 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTG 2215967 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 2215968 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 2216027 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | ||||| || | | ||||| | || ||| | ||||| | Sbjct 2216028 AAAATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCC 2216087 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | | |||| | | |||| || || || | || | |||| ||||||||| | ||| Sbjct 2216088 CCAGTCCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCA 2216147 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | ||| ||| ||| |||| || || ||||| || | ||| | Sbjct 2216148 TTGAAGAGAAATTC-CCTTTCGCTG-GGATCTTTTATGTAAGTGTCAATAAGGAGACTAT 2216205 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||||| || |||||||| || |||| || || ||||||||||| || || || || | Sbjct 2216206 ACATTTCAGAATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTG 2216265 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || || || | |||||| ||| ||| ||| ||||| || || || | ||| | Sbjct 2216266 TAATCTGAACCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCG 2216325 Query 16617 CAGCAAAAAACGCCA 16631 | ||||| || |||| Sbjct 2216326 CTGCAAAGAAAGCCA 2216340 >seq22719 Length=8987742 Score = 226 bits (250), Expect = 3e-54 Identities = 585/886 (66%), Gaps = 24/886 (3%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || ||||||||||| ||||| || | Sbjct 8555303 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 8555244 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| |||| ||||| || ||||||| ||| | |||| Sbjct 8555243 GAAATATTCTCCATAAAGGCAAATGGATTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 8555186 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 8555185 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 8555127 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | || | ||||||||| ||| || Sbjct 8555126 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCA 8555067 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| || || | ||| || || ||| | || || |||||| ||||| Sbjct 8555066 TTCATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATC 8555007 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||||||| |||||||| || ||||| || Sbjct 8555006 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTG 8554947 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 8554946 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 8554887 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | ||||| || | | ||||| | || ||||| ||||| | Sbjct 8554886 AAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCC 8554827 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | |||| || || || | | | |||| ||||||||| ||||| Sbjct 8554826 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCA 8554767 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || ||| || ||| | |||| | ||| |||| | || ||||| || ||||| | Sbjct 8554766 TTGAAAAGAAATTCCC--TTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTAT 8554709 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||||| || |||||||| || ||||| || | || || | || | Sbjct 8554708 ACATTTCAGAATGTATGTTTTCCATGGCAAT--------------AACAGCGGGTTTCTG 8554663 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || ||||| | |||| | ||| ||| ||| ||||| || || | ||||||| Sbjct 8554662 TAATCTGAACTTCTTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTG 8554603 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | ||||| || |||| | ||| || || ||| | || | | | || | || Sbjct 8554602 CTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTTGGGCTTCAGGGATTCCC 8554543 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | || ||| | | ||||| || || | ||||| ||| ||| | |||| Sbjct 8554542 AGTGCCGAATGTCCTTGAACAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCT 8554483 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | |||||||| | ||| |||| | ||| | ||||| || | ||| Sbjct 8554482 TCTTATACATCTGCCAGATATTGTGGTACTCGATGGGGAAAATGAC 8554437 >seq18140 Length=5205659 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| ||||| Sbjct 751641 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTTTTCT 751582 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| || || | Sbjct 751581 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 751522 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 751521 CCACCACTCTTTCC 751508 >seq27380 Length=10165399 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 7666631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511229510909040