Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq12486 241 1e-58 seq19633 105 5e-18 seq16616 93.3 3e-14 >seq12486 Length=6174982 Score = 241 bits (266), Expect = 1e-58 Identities = 502/743 (68%), Gaps = 10/743 (1%) Strand=Plus/Minus Query 18607 GAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 || ||||||||||||| |||| || | | | | || |||| || || |||| |||| Sbjct 2654918 GAGATGAATTTCCTCTGCTAACAACCGAACATCTGTTCTGGAAGGGTGTTTTGGAGGAGT 2654859 Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACA 18726 |||| ||||||||| || || || || | |||| || | | || | | | | Sbjct 2654858 TGTTGTGGTTTATCAAGGGATCCACAAATGCTGAAGAGCTGCCTTCCAAGGGAGTGAAAA 2654799 Query 18727 TATGGGATATATACGGATCGAGCAAA--TTTCTAAATAGGAATGGCTTCCATAAAAGACA 18784 | |||||| | |||| | ||| ||||| |||| || ||| ||| | Sbjct 2654798 TCTGGGATGCCAATGGAT--ACCAAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGA 2654741 Query 18785 CACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAA 18844 |||||| | ||||| |||| |||||||| ||||| |||||||| || ||||| | Sbjct 2654740 AGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAATGGAGGCATTTTGGGGCAGAATAGAG 2654681 Query 18845 AGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATAC 18904 | | | | ||| | |||| | ||||| | || || ||||||| || || || || Sbjct 2654680 ATATGG--ATTCAGATTATTCAGGAAAAGGAGTTGACCAACTGCAAAGAGTGATTGACAC 2654623 Query 18905 AATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 || ||||| ||||| || | || |||| || | | |||||||||||| ||| | Sbjct 2654622 CATCAAAACCAACCCTGATGACAGAAGAATCATCACGTGCACTTGGAATCCAAGAGATCT 2654563 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 || | |||| || |||||||| || | | || ||||| || || | || ||||| Sbjct 2654562 TCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTAAGTGGTGAATGGTGA 2654503 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 | |||||||| | |||||| ||||||| || || ||||| || || || |||||||| Sbjct 2654502 GCTGTCCTGCCAGCTGTACCAGCGATCGGGAGACATCGGCCTAGGTGTGCCTTTCAACAT 2654443 Query 19085 TGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA 19144 || | || || || || | ||||| | ||||| | || || || || | || || Sbjct 2654442 CGCCAGCTAGGCCCTGCTCATGTACATGATCGCGCACATCACGGGCCTGAAGCCGGGTGA 2654383 Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGT 19204 || | ||||| |||| ||||||||||||||| ||||||| || || | | ||| | Sbjct 2654382 CTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGAAAAT 2654323 Query 19205 GCAGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACA 19262 ||||| ||| || ||| | |||||| || || || ||| ||||||| || Sbjct 2654322 TCAGCTTCAGCGAGAACCC--AGACCTTTCCCAAAACTCAAGATTCTTCGAAAAGTTGAG 2654265 Query 19263 GATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccc 19322 | || | ||||| ||| || || ||| || |||| || || |||||||| || | Sbjct 2654264 AAAATTGATGACTTCAAAACTGAAGACTTTAAGGTTGAAGGGTACAATCCACATCCAGCT 2654205 Query 19323 cTAAAAATGGAAATGGCTCTTTA 19345 | ||||||||||||||| |||| Sbjct 2654204 ATTAAAATGGAAATGGCTGTTTA 2654182 Score = 140 bits (154), Expect = 3e-28 Identities = 295/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 18607 GAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 || ||||||||||||| | || || | | | | || |||| || || |||| |||| Sbjct 332427 GAGATGAATTTCCTCTGCTGACAACCGAACATCTGTTCTGGAAGGGTGTTTTGGAGGAGT 332368 Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACA 18726 || | ||||||||| || || || || | ||||| || | | || | | | | Sbjct 332367 TGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAA 332308 Query 18727 TATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACA 18786 | |||||| | ||||| | | ||||| |||| || ||| ||| | Sbjct 332307 TCTGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAG 332248 Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846 |||||| | ||||| |||| |||||||||||||| |||||||| || ||||| | || Sbjct 332247 AAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAG 332188 Query 18847 ACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 | | ||| | |||| | |||||| | || || ||||||| || || || || | Sbjct 332187 ATATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCA 332128 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||||| ||||| || | || |||| || || | |||||||||||| ||| | | Sbjct 332127 TCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTC 332068 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 | | |||| || |||||||| || | | || ||||| || || | |||||||| Sbjct 332067 CTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTAAGTGGTGAACGGTGAGC 332008 Query 19027 TATCCTGCCAAGTATACCAG 19046 | |||||||| | |||||| Sbjct 332007 TGTCCTGCCAGCTGTACCAG 331988 >seq19633 Length=3468624 Score = 105 bits (116), Expect = 5e-18 Identities = 246/368 (67%), Gaps = 5/368 (1%) Strand=Plus/Plus Query 18587 GCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTG 18646 ||| || || |||| || || ||||||||||||| | || || || || | || || Sbjct 1959656 GCAGGCGCGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAATGTCTGTTCTG 1959715 Query 18647 GAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACT 18706 || || || |||| || ||| | ||||||||| || || || || | ||||| || Sbjct 1959716 GAAGGGTGTTTTGGAGGAATTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAGCT 1959775 Query 18707 CGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAA 18766 | | || | | | || |||||| | ||||| | | ||||| |||| Sbjct 1959776 GTCATCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCTGAGACTTTCTGGATAGCTT 1959835 Query 18767 TGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACA 18826 || ||| ||| | |||||| | ||||| |||| |||||||||||||| || Sbjct 1959836 GGGATTCTCCGCCAGAGAA---GGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCA 1959892 Query 18827 TTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCT 18886 |||||| || ||||| | ||| || | ||| | |||| | |||||| | || || || Sbjct 1959893 TTTTGGGGCAGAATACAGAGA-TG-GATTCAGATTATTCAGGACAAGGAGTTGACCAACT 1959950 Query 18887 GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTC 18946 ||||| || || || || || ||||| ||||| || | || |||| || || | | Sbjct 1959951 GCAAAGAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCAC 1960010 Query 18947 TTGGAATC 18954 |||||||| Sbjct 1960011 TTGGAATC 1960018 >seq16616 Length=7972016 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || |||||||| || | | || ||||| || || | |||||||| | || Sbjct 2012343 ATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACGGTGAGCTGTCT 2012284 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||||||||| || |||||||| || || || ||||||||||| | Sbjct 2012283 TGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATTGCCAGC 2012224 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCA 19120 || || || || || ||||| | ||||| Sbjct 2012223 TACGCCCTGCTCACGTACATGATCGCGCA 2012195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399363180083490