Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq18650 251 8e-62 seq12486 206 3e-48 seq19809 168 8e-37 seq16616 165 1e-35 >seq18650 Length=3528617 Score = 251 bits (278), Expect = 8e-62 Identities = 600/888 (68%), Gaps = 23/888 (3%) Strand=Plus/Plus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||||| || | || | ||||||||| | || |||||| | || |||||| |||| Sbjct 3290579 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 3290638 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | || || || | || || || | ||| | ||| |||| || || ||| |||| Sbjct 3290639 AGGAGACTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCCGACCTGCTC 3290698 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 || || || || | ||||| ||||| |||||||| |||| ||| ||| |||| Sbjct 3290699 TTCCTCTTTACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGACTGGGTTTTT 3290755 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | ||||||| | || ||| | | || || | |||||||| || || Sbjct 3290756 GGCCGTGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTGTACAGCGAGATC 3290815 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 9785 |||| |||||||||||| || | |||||||| || || ||||| | || || ||| Sbjct 3290816 TTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 3290875 Query 9786 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTG 9843 || ||| | || || |||| ||| | | ||| | | ||| |||||| ||| Sbjct 3290876 CTTCGAGCCC--GCACTGTCACCTTTGGTGTCATCACCAGCAT-TGTCACCTGGGGCCTG 3290932 Query 9844 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT--A 9901 |||| | | | |||||||||||| |||| || | | ||| | | || | | | Sbjct 3290933 GCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACCGAAA--ACGTTCTTCAA 3290989 Query 9902 GGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCA 9959 |||| | | || | ||| ||||| ||| ||| || | |||| || | | Sbjct 3290990 GGGTCTTATTGCAACCCTGTGTACCCCGAGGATGGAG-CACAGAGCTGGAAGCATTTCTA 3291048 Query 9960 CGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTA 10019 | | | |||| || || ||| | | ||||||||| ||||||| ||||||| Sbjct 3291049 TGCTCTGAGAGTGAACATCTTGGTTCTTGCTCTCCCTCTGCTCGTTATGGCCATCTGCTA 3291108 Query 10020 CTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAG 10079 | | ||| |||| || |||| ||||| |||||| || || |||| |||||||||| | Sbjct 3291109 CACAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTGCAAGGCCATCCG 3291168 Query 10080 GCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCT 10139 ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | | ||| Sbjct 3291169 ACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGCTCT 3291228 Query 10140 CCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGTAAC 10197 ||| || | |||||||| || ||| | | | | || | || ||| ||||| | Sbjct 3291229 CCTTCTCTACACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAGGAT 3291286 Query 10198 TTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCA 10257 ||||| |||| || || | || | | |||||| | ||||| ||| | ||||| Sbjct 3291287 CTGGACCTGGCCCTACTTGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAACCCG 3291346 Query 10258 GTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACAC 10316 |||||||| || ||||| || |||| ||| ||||| ||||| |||||||||||||| Sbjct 3291347 GTGATCTATGCCTTCGTTGGAGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTCCACAG 3291405 Query 10317 CTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 ||||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 3291406 GCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTCCCTAGTGA 3291453 Score = 251 bits (278), Expect = 8e-62 Identities = 600/888 (68%), Gaps = 23/888 (3%) Strand=Plus/Plus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||||| || | || | ||||||||| | || |||||| | || |||||| |||| Sbjct 3290579 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 3290638 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | || || || | || || || | ||| | ||| |||| || || ||| |||| Sbjct 3290639 AGGAGACTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCCGACCTGCTC 3290698 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 || || || || | ||||| ||||| |||||||| |||| ||| ||| |||| Sbjct 3290699 TTCCTCTTTACCCTTCCATTCTGGATCCACTATATC---ATGTGGAGTGACTGGGTTTTT 3290755 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | ||||||| | || ||| | | || || | |||||||| || || Sbjct 3290756 GGCCGTGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTGTACAGCGAGATC 3290815 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 176671 |||| |||||||||||| || | |||||||| || || ||||| | || || ||| Sbjct 3290816 TTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 3290875 Query 176672 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTG 176729 || ||| | || || |||| ||| | | ||| | | ||| |||||| ||| Sbjct 3290876 CTTCGAGCCC--GCACTGTCACCTTTGGTGTCATCACCAGCAT-TGTCACCTGGGGCCTG 3290932 Query 176730 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT--A 176787 |||| | | | |||||||||||| |||| || | | ||| | | || | | | Sbjct 3290933 GCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACCGAAA--ACGTTCTTCAA 3290989 Query 176788 GGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCA 176845 |||| | | || | ||| ||||| ||| ||| || | |||| || | | Sbjct 3290990 GGGTCTTATTGCAACCCTGTGTACCCCGAGGATGGAG-CACAGAGCTGGAAGCATTTCTA 3291048 Query 176846 CGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTA 176905 | | | |||| || || ||| | | ||||||||| ||||||| ||||||| Sbjct 3291049 TGCTCTGAGAGTGAACATCTTGGTTCTTGCTCTCCCTCTGCTCGTTATGGCCATCTGCTA 3291108 Query 176906 CTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAG 176965 | | ||| |||| || |||| ||||| |||||| || || |||| |||||||||| | Sbjct 3291109 CACAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAAAAAAAAGTGCAAGGCCATCCG 3291168 Query 176966 GCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCT 177025 ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | | ||| Sbjct 3291169 ACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGCTCT 3291228 Query 177026 CCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGTAAC 177083 ||| || | |||||||| || ||| | | | | || | || ||| ||||| | Sbjct 3291229 CCTTCTCTACACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAGGAT 3291286 Query 177084 TTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCA 177143 ||||| |||| || || | || | | |||||| | ||||| ||| | ||||| Sbjct 3291287 CTGGACCTGGCCCTACTTGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAACCCG 3291346 Query 177144 GTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACAC 177202 |||||||| || ||||| || |||| ||| ||||| ||||| |||||||||||||| Sbjct 3291347 GTGATCTATGCCTTCGTTGGAGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTCCACAG 3291405 Query 177203 CTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 ||||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 3291406 GCACGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTCCCTAGTGA 3291453 >seq12486 Length=6174982 Score = 206 bits (228), Expect = 3e-48 Identities = 476/711 (67%), Gaps = 16/711 (2%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||| ||||| || || | || || | ||| || || | | |||||| Sbjct 2654182 TAAACAGCCATTTCCATTTTAATAGCTGGATGTGGATTGTACCCTTCAACCTTAAAGTCT 2654241 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGGG 145655 || | |||||||||| || | ||| || | || ||| |||| | |||||||| Sbjct 2654242 TCAGTTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGTTTTGGGAAAGGT 2654301 Query 145656 CCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714 | ||| ||| ||| ||||| | ||||| ||||| | ||| || ||||| | || | Sbjct 2654302 CTGGGTTCTCGCTGA--AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTG 2654359 Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774 | || |||| || | ||||| || |||| |||||||||| ||| |||| ||||| Sbjct 2654360 CATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCGCGATCATGT 2654419 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 | | ||||||| |||||||| |||||||| ||||| || || || ||||| ||||| | Sbjct 2654420 ACATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGTCTCCCGATC 2654479 Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGC 145894 ||||||||||||||||||| ||||| || | |||| ||||||||||| ||| |||| Sbjct 2654480 GCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAGAGGGCATGGC 2654539 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 | || ||||| ||||| || || || || ||||| | | || || || | Sbjct 2654540 ATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGTGCACGTGATGATTCTTC 2654599 Query 145955 TGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG-AGCTGGTCCACGCCCTGC 146013 || || ||||| | ||||| | |||| || || || ||||| || || | Sbjct 2654600 TGTCATCAGGGTTGGTTTTGATGGTGTCAATCA-CTCTTTGCAGTTGGTCAACTCCTTTT 2654658 Query 146014 CCCCGGTAATCTGTCTTGGAGTCCA----CGTACGCGGCCCCGAAGTGCCTCCACTGGAA 146069 || |||||| || |||| || | ||||| || |||||||| ||||| Sbjct 2654659 CCTGAATAATCT------GAATCCATATCTCTATTCTGCCCCAAAATGCCTCCATTGGAA 2654712 Query 146070 CCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAA 146129 || || || || |||| |||||| || ||| | || | | || || Sbjct 2654713 GCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAA 2654772 Query 146130 GTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTC 146189 ||| || | || ||||| |||||||| || || ||| | | | ||||| | | | Sbjct 2654773 GTCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAGCATT 2654832 Query 146190 CGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 ||||| ||| |||| ||||| | || ||| || | || ||| ||||||| Sbjct 2654833 TGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAA 2654883 >seq19809 Length=37303394 Score = 168 bits (186), Expect = 8e-37 Identities = 132/157 (84%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| ||||| ||| || ||||||||||||||||| ||||| | ||| Sbjct 33037708 CAGCGTCGCAGCCTCAGCCTGAAGGTCTTCAGCTTTTCCCCCAGGGAATTCACATGCTCC 33037767 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || | ||| | | |||||||| || |||||||||||||||||||||||||||||| Sbjct 33037768 TTGAC---GTCTGGGTCATGGTTCTCTGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 33037824 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 33037825 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 33037861 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||||| | |||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 33035434 TCAGTTTTGCGTCTTCATTGTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTC 33035493 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| ||||||| ||||| || ||||||| Sbjct 33035494 ACTCATGGCTTTGTAGATGCCTTTCTCTTGGAGCT 33035528 >seq16616 Length=7972016 Score = 165 bits (182), Expect = 1e-35 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 2012183 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 2012242 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | ||||||||||||||| || ||||| ||| | || Sbjct 2012243 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACC 2012302 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 2012303 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 2012343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589863472484880