Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3414 488 7e-133 seq20536 407 2e-108 seq20843 347 1e-90 seq24313 311 1e-79 seq8258 123 3e-23 >seq3414 Length=27932887 Score = 488 bits (540), Expect = 7e-133 Identities = 448/564 (79%), Gaps = 2/564 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||| Sbjct 20146726 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 20146785 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| |||| | ||||||||| |||||||| || || ||||| ||| Sbjct 20146786 ACAGGAACACCGTCAGGGTCCACGAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 20146845 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||| ||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 20146846 CACACCGGAGACTAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAATGGCATCGTCGCTG 20146905 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| ||||||||||| | |||||||||||||| ||||| | ||| |||||||| ||| Sbjct 20146906 GGCAATGGCAGGGCCTCCGGAAGGAAGGCGAAGAGAGGATGCGACCTCGCACCGTTCACC 20146965 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||| ||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 20146966 TCGCGCTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 20147025 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| ||| ||||| | || | |||||| ||||| || || |||||||| ||| || Sbjct 20147026 AGGGAATTCAAAATCTCTTCGTTTTTGGCGTTCTCCTGATGTCCAAACTGGTTGCACCGG 20147085 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||||| | || |||||| ||||||||||||||||||| ||| Sbjct 20147086 AAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGCGCAGCTGCAGCTCGTTCATCTGGGTG 20147145 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| | |||||||||||||| || |||||||| |||| ||| || | Sbjct 20147146 TAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAGCAGCACCTTGCAC 20147205 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | | || | ||||||||| || || |||| | |||||| || |||||||||||| Sbjct 20147206 CGCAGGGAACCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCCGAGAAGGCGTAC 20147265 Query 83597 ACAGATCTGGTC-TCTGCCGCGGC 83619 || || |||| | ||||||| || Sbjct 20147266 ACCGA-CTGGGCAGCTGCCGCCGC 20147288 >seq20536 Length=13018661 Score = 407 bits (450), Expect = 2e-108 Identities = 446/588 (76%), Gaps = 5/588 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| |||| ||||||||||| || Sbjct 6194896 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGACGGCTGTACCTGTGC 6194837 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||||| ||||||| ||||||||| |||||||| | || || |||||| Sbjct 6194836 ACGGGGACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATACAACATCTTTGCGG 6194777 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 | || ||||||| || ||||||| ||||||| ||| ||||| | |||||| | Sbjct 6194776 CCTACCGGAGACCCGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGTTG 6194717 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||||||||| || |||||||||||||| || | | || |||||||| ||| Sbjct 6194716 GGCGTTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGCGCGACCCCGCACCGTTCACC 6194657 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||||||| | ||||| ||||| || || ||||| ||||||| ||| Sbjct 6194656 TCCCACTTCTCGAAGAGCTTGAAGTTGGGCTCAAACCCACCACCAGGTCGGACGTACTTG 6194597 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| | ||||| | ||| |||||| ||||| || | |||||||| ||| || Sbjct 6194596 AGGGAATTCCGAATCTCTTCGTTCCTGGCGTTCTCCTGATGTCTCAACTGGTTGCACCGG 6194537 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | || |||||||||||||||||||||||| | ||| Sbjct 6194536 AAGCCAAGCACCACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTCGTTCATCGGGGTG 6194477 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || | |||||||| | | |||||||||||||| || ||| |||| ||| || || ||| Sbjct 6194476 TAGTGCCGGACCGCGGTGCCTCAGAGGGACGCCACATTCCCGATAAGC-AGCGCCTTCCC 6194418 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | | || |||| |||| || || |||| | |||| | || ||||| ||| || Sbjct 6194417 CGCAGGGAACCCGGGCTCGCAGGCTCCCCGCCGGCTAGCGGGAGCGCCGAGAA-GCGCAC 6194359 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACAG 83644 || || |||| | ||||| || || | || || || |||| ||| Sbjct 6194358 ACCGA-CTGG--GCCGCCGCCGCTTGCCGAGCAGCACACGTGGCGCAG 6194314 >seq20843 Length=21849567 Score = 347 bits (384), Expect = 1e-90 Identities = 431/586 (74%), Gaps = 7/586 (1%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| | |||||| | ||| | | | | ||||||| |||| ||||||||||| ||| Sbjct 12333171 CAGGGCTTGGATGTCAGCCTCGATGTCAATGGTCTGGAAGCGC-GGCTGTACCTGTACAC 12333113 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || || || ||| |||||||| |||||||||||| || |||||||| || Sbjct 12333112 GGGGTCACCAGTAGGGCCATCCAGGAACTTCTTGAAGTTCCAGGCAACATCGTTGCGACA 12333053 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| ||||| | | || | || ||| ||| ||| | | ||||| ||| || Sbjct 12333052 CACCAGAGACACTGGA--GACCAGG---TCGGTCATGAGTGCAGTGGCGTCGTTGCTGGG 12332998 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || ||||||||||| || |||||||||||||| || || | |||||||||||||||||| Sbjct 12332997 TGCTGGCAGGGCCTC-CGCAGGAAGGCGAAGAGAGGGTGCGACCTTGCACCGTTGACCTC 12332939 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||| | |||||| ||||| |||||||| || ||||| | ||||| ||| || Sbjct 12332938 ACACTTCCCAAAGAGCGAGAAGTTGGGCTCGAACCCACCACCAGGTCAGACGTACTTTAG 12332879 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| || ||||| | |||| |||||| ||||| || || |||||||| |||||||| Sbjct 12332878 GGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGGAA 12332819 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 || ||||| ||||| | | | || |||| |||||||||||||| |||||| ||||| Sbjct 12332818 GCCGAGCACCACCAGGTCACTGGGCCCAAGGCACCGCTGCAGCTCGTCCATCTGGGTGTA 12332759 Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||| |||||||| | |||||||||| ||| || |||| ||| | || || |||| | Sbjct 12332758 GTCCTGGACCGTGGTGCCTCAGAGGGTCGCCACATTCTTGATAAACAGTGCCTTGCCCTG 12332699 Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | |||||| ||| ||||| || || |||| || ||| | || ||| ||| ||||| Sbjct 12332698 CAGGGAGCCTAGGCTTACAGGCTCCCCACCGGCCATGGGGAGCGCCAAGAGGGCATACAC 12332639 Query 83599 AGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACAG 83644 | || | | || || || ||||| || || || |||| ||| Sbjct 12332638 CAACTGGGACACCGCTGCCGCTAGCTGAGCAGCACACATGGCGCAG 12332593 >seq24313 Length=18748 Score = 311 bits (344), Expect = 1e-79 Identities = 271/337 (80%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||| Sbjct 10552 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 10611 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| ||||||| ||||||||| |||||||| || || ||||| ||| Sbjct 10612 ACAGGAACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 10671 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || |||||||||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 10672 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 10731 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || |||||||||||||| || |||| || |||||||| ||| Sbjct 10732 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGTGACCCCGCACCGTTCACC 10791 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||| |||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 10792 TCGCATTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 10851 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 10852 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 10888 Score = 205 bits (226), Expect = 1e-47 Identities = 201/258 (78%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 11142 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGC 11201 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | |||||||| ||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 11202 GTCGCTGCAGTTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 11261 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| |||| ||| |||||| | | | || | ||||||||| || || |||| Sbjct 11262 CATTCTCGATAAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCACAGGCTCCCCGCCGG 11321 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCT----GGTCTCTGCCGCGGCAAGCTGT 83626 | |||||| || |||||||||||||| || || || | | ||||| || ||| | Sbjct 11322 CTAGCGGGCGCGCCGAGAAGGCGTACACCGA-CTGGGCGGCCACCGCCGCAGCTAGCCGA 11380 Query 83627 GCCGCGTACTTGGCACAG 83644 || || || |||| ||| Sbjct 11381 GCAGCACACATGGCGCAG 11398 >seq8258 Length=12310364 Score = 123 bits (136), Expect = 3e-23 Identities = 193/270 (71%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 5442725 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 5442783 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || ||||||| ||||| || || |||||||||| || ||| | ||||||| Sbjct 5442784 TGGTGCACCTGTTTCCCGAGCTGTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 5442843 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 5442844 GCGGCTCCCTGGGCAAGAAGCAG-CTAGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 5442902 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 5442903 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 5442958 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 || ||||||||||| || |||||||| Sbjct 5442959 GGGCAAACTGGACGAGCGTTGTCGGCGCCG 5442988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608576704736880